RNA–Protein interactions for RNA: ENST00000469207.5

HDAC3-204, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-204ENST00000469207 CLUHO75153 1309 aa13.6□□□□□ -0.23
HDAC3-204ENST00000469207 PTGESO14684 152 aa13.59□□□□□ -0.23
HDAC3-204ENST00000469207 ADAM12O43184 909 aa13.59□□□□□ -0.23
HDAC3-204ENST00000469207 NEMFO60524 1076 aa13.59□□□□□ -0.23
HDAC3-204ENST00000469207 LAMP2P13473 410 aa13.59□□□□□ -0.23
HDAC3-204ENST00000469207 LIG1P18858 919 aa13.59□□□□□ -0.23
HDAC3-204ENST00000469207 MCM7P33993 719 aa13.59□□□□□ -0.23
HDAC3-204ENST00000469207 ST3GAL1Q11201 340 aa13.59□□□□□ -0.23
HDAC3-204ENST00000469207 CEP57Q86XR8 500 aa13.59□□□□□ -0.23
HDAC3-204ENST00000469207 NOSTRINQ8IVI9 506 aa13.59□□□□□ -0.23
HDAC3-204ENST00000469207 CCDC105Q8IYK2 499 aa13.59□□□□□ -0.23
HDAC3-204ENST00000469207 GPR152Q8TDT2 470 aa13.59□□□□□ -0.23
HDAC3-204ENST00000469207 WASF1Q92558 559 aa13.59□□□□□ -0.23
HDAC3-204ENST00000469207 CCDC43Q96MW1 224 aaKnown RBP13.59□□□□□ -0.23
HDAC3-204ENST00000469207 CLSTN3Q9BQT9 956 aa13.59□□□□□ -0.23
HDAC3-204ENST00000469207 NFKBIZQ9BYH8 718 aa13.59□□□□□ -0.23
HDAC3-204ENST00000469207 PRKD2Q9BZL6 878 aa13.59□□□□□ -0.23
HDAC3-204ENST00000469207 BRMS1Q9HCU9 246 aa13.59□□□□□ -0.23
HDAC3-204ENST00000469207 EPS15L1Q9UBC2 864 aa13.59□□□□□ -0.23
HDAC3-204ENST00000469207 WNT16Q9UBV4 365 aa13.59□□□□□ -0.23
HDAC3-204ENST00000469207 KIF4AO95239 1232 aa13.58□□□□□ -0.24
HDAC3-204ENST00000469207 DCNP07585 359 aaKnown RBP13.58□□□□□ -0.24
HDAC3-204ENST00000469207 GRIK3Q13003 919 aa13.58□□□□□ -0.24
HDAC3-204ENST00000469207 HSP90AA2PQ14568 343 aaPredicted RBP13.58□□□□□ -0.24
HDAC3-204ENST00000469207 ZNF174Q15697 407 aa13.58□□□□□ -0.24
HDAC3-204ENST00000469207 SPECC1Q5M775 1068 aa13.58□□□□□ -0.24
HDAC3-204ENST00000469207 FAM171A1Q5VUB5 890 aa13.58□□□□□ -0.24
HDAC3-204ENST00000469207 EEF1DP3Q658K8 133 aa13.58□□□□□ -0.24
HDAC3-204ENST00000469207 GRASPQ7Z6J2 395 aaPredicted RBP13.58□□□□□ -0.24
HDAC3-204ENST00000469207 ADSSL1Q8N142 457 aa13.58□□□□□ -0.24
HDAC3-204ENST00000469207 LNX1Q8TBB1 728 aaPredicted RBP13.58□□□□□ -0.24
HDAC3-204ENST00000469207 STAMQ92783 540 aa13.58□□□□□ -0.24
HDAC3-204ENST00000469207 NKD2Q969F2 451 aaPredicted RBP13.58□□□□□ -0.24
HDAC3-204ENST00000469207 RTP3Q9BQQ7 232 aa13.58□□□□□ -0.24
HDAC3-204ENST00000469207 FZD8Q9H461 694 aa13.58□□□□□ -0.24
HDAC3-204ENST00000469207 PLEKHA4Q9H4M7 779 aa13.58□□□□□ -0.24
HDAC3-204ENST00000469207 PDZD7Q9H5P4 517 aa13.58□□□□□ -0.24
HDAC3-204ENST00000469207 FNIP2Q9P278 1114 aa13.58□□□□□ -0.24
HDAC3-204ENST00000469207 LRRN2O75325 713 aa13.57□□□□□ -0.24
HDAC3-204ENST00000469207 ZMYND10O75800 440 aa13.57□□□□□ -0.24
HDAC3-204ENST00000469207 XRCC6P12956 609 aaKnown RBP eCLIP13.57□□□□□ -0.24
HDAC3-204ENST00000469207 NEK4P51957 841 aa13.57□□□□□ -0.24
HDAC3-204ENST00000469207 ANKRD1Q15327 319 aa13.57□□□□□ -0.24
HDAC3-204ENST00000469207 NAB2Q15742 525 aa13.57□□□□□ -0.24
HDAC3-204ENST00000469207 ECM1Q16610 540 aa13.57□□□□□ -0.24
HDAC3-204ENST00000469207 PARM1Q6UWI2 310 aa13.57□□□□□ -0.24
HDAC3-204ENST00000469207 HACE1Q8IYU2 909 aa13.57□□□□□ -0.24
HDAC3-204ENST00000469207 HDAC7Q8WUI4 952 aa13.57□□□□□ -0.24
HDAC3-204ENST00000469207 KIFC3Q9BVG8 833 aa13.57□□□□□ -0.24
HDAC3-204ENST00000469207 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.57□□□□□ -0.24
HDAC3-204ENST00000469207 PRMT7Q9NVM4 692 aaPredicted RBP13.57□□□□□ -0.24
HDAC3-204ENST00000469207 DPP7Q9UHL4 492 aa13.57□□□□□ -0.24
HDAC3-204ENST00000469207 GDAQ9Y2T3 454 aa13.57□□□□□ -0.24
HDAC3-204ENST00000469207 NUMBLQ9Y6R0 609 aa13.57□□□□□ -0.24
HDAC3-204ENST00000469207 DOCK8Q8NF50 2099 aa13.57□□□□□ -0.24
HDAC3-204ENST00000469207 MTCL1Q9Y4B5 1905 aaKnown RBP13.56□□□□□ -0.24
HDAC3-204ENST00000469207 CCL16O15467 120 aa13.56□□□□□ -0.24
HDAC3-204ENST00000469207 RECQL4O94761 1208 aa13.56□□□□□ -0.24
HDAC3-204ENST00000469207 SEC24BO95487 1268 aa13.56□□□□□ -0.24
HDAC3-204ENST00000469207 SRFP11831 508 aa13.56□□□□□ -0.24
HDAC3-204ENST00000469207 GPC5P78333 572 aa13.56□□□□□ -0.24
HDAC3-204ENST00000469207 TUSC3Q13454 348 aa13.56□□□□□ -0.24
HDAC3-204ENST00000469207 HTR4Q13639 388 aa13.56□□□□□ -0.24
HDAC3-204ENST00000469207 GLRA4Q5JXX5 417 aa13.56□□□□□ -0.24
HDAC3-204ENST00000469207 CDCA2Q69YH5 1023 aaPredicted RBP13.56□□□□□ -0.24
HDAC3-204ENST00000469207 PADI6Q6TGC4 694 aa13.56□□□□□ -0.24
HDAC3-204ENST00000469207 CYP26C1Q6V0L0 522 aa13.56□□□□□ -0.24
HDAC3-204ENST00000469207 PPP4R3CPQ6ZMV5 832 aa13.56□□□□□ -0.24
HDAC3-204ENST00000469207 FGF14Q92915 247 aa13.56□□□□□ -0.24
HDAC3-204ENST00000469207 RHOBTB2Q9BYZ6 727 aa13.56□□□□□ -0.24
HDAC3-204ENST00000469207 TBC1D17Q9HA65 648 aa13.56□□□□□ -0.24
HDAC3-204ENST00000469207 ZDHHC7Q9NXF8 308 aa13.56□□□□□ -0.24
HDAC3-204ENST00000469207 POLIQ9UNA4 740 aa13.56□□□□□ -0.24
HDAC3-204ENST00000469207 R4GN57 208 aa13.56□□□□□ -0.24
HDAC3-204ENST00000469207 COL4A3Q01955 1670 aa13.56□□□□□ -0.24
HDAC3-204ENST00000469207 RIF1Q5UIP0 2472 aaKnown RBP13.55□□□□□ -0.24
HDAC3-204ENST00000469207 ANHXE9PGG2 379 aa13.55□□□□□ -0.24
HDAC3-204ENST00000469207 PAPLNO95428 1278 aa13.55□□□□□ -0.24
HDAC3-204ENST00000469207 THP07101 528 aa13.55□□□□□ -0.24
HDAC3-204ENST00000469207 GLULP15104 373 aa13.55□□□□□ -0.24
HDAC3-204ENST00000469207 FSHRP23945 695 aa13.55□□□□□ -0.24
HDAC3-204ENST00000469207 ANAPC15P60006 121 aa13.55□□□□□ -0.24
HDAC3-204ENST00000469207 PRPF4BQ13523 1007 aaKnown RBP13.55□□□□□ -0.24
HDAC3-204ENST00000469207 PSMD5Q16401 504 aa13.55□□□□□ -0.24
HDAC3-204ENST00000469207 TMEM132AQ24JP5 1023 aa13.55□□□□□ -0.24
HDAC3-204ENST00000469207 NT5DC1Q5TFE4 455 aa13.55□□□□□ -0.24
HDAC3-204ENST00000469207 POTEHQ6S545 545 aa13.55□□□□□ -0.24
HDAC3-204ENST00000469207 RSPO2Q6UXX9 243 aaPredicted RBP13.55□□□□□ -0.24
HDAC3-204ENST00000469207 ZBTB8OSQ8IWT0 167 aa13.55□□□□□ -0.24
HDAC3-204ENST00000469207 ITFG1Q8TB96 612 aa13.55□□□□□ -0.24
HDAC3-204ENST00000469207 NACC1Q96RE7 527 aa13.55□□□□□ -0.24
HDAC3-204ENST00000469207 TTPALQ9BTX7 342 aa13.55□□□□□ -0.24
HDAC3-204ENST00000469207 POLR3CQ9BUI4 534 aaPredicted RBP13.55□□□□□ -0.24
HDAC3-204ENST00000469207 FOXQ1Q9C009 403 aa13.55□□□□□ -0.24
HDAC3-204ENST00000469207 CCDC113Q9H0I3 377 aa13.55□□□□□ -0.24
HDAC3-204ENST00000469207 TUFT1Q9NNX1 390 aa13.55□□□□□ -0.24
HDAC3-204ENST00000469207 HCFC1R1Q9NWW0 138 aa13.55□□□□□ -0.24
HDAC3-204ENST00000469207 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.55□□□□□ -0.24
HDAC3-204ENST00000469207 I3L4J1 428 aa13.54□□□□□ -0.24
HDAC3-204ENST00000469207 ACKR2O00590 384 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms