RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 FBXL18Q96ME1 805 aa20.99■□□□□ 0.95
COL7A1-207ENST00000467985 SFXN1Q9H9B4 322 aa20.99■□□□□ 0.95
COL7A1-207ENST00000467985 KMT5AQ9NQR1 393 aa20.99■□□□□ 0.95
COL7A1-207ENST00000467985 TNFSF13BQ9Y275 285 aa20.99■□□□□ 0.95
COL7A1-207ENST00000467985 C2CD2LO14523 706 aa20.98■□□□□ 0.95
COL7A1-207ENST00000467985 C1RP00736 705 aa20.98■□□□□ 0.95
COL7A1-207ENST00000467985 EDN1P05305 212 aa20.98■□□□□ 0.95
COL7A1-207ENST00000467985 CREMQ03060 361 aa20.98■□□□□ 0.95
COL7A1-207ENST00000467985 HSP90AA2PQ14568 343 aaPredicted RBP20.98■□□□□ 0.95
COL7A1-207ENST00000467985 USP41Q3LFD5 358 aa20.98■□□□□ 0.95
COL7A1-207ENST00000467985 ATAT1Q5SQI0 421 aa20.98■□□□□ 0.95
COL7A1-207ENST00000467985 RARS2Q5T160 578 aaKnown RBP20.98■□□□□ 0.95
COL7A1-207ENST00000467985 EEF1DP3Q658K8 133 aa20.98■□□□□ 0.95
COL7A1-207ENST00000467985 TAS1R1Q7RTX1 841 aa20.98■□□□□ 0.95
COL7A1-207ENST00000467985 EDAQ92838 391 aa20.98■□□□□ 0.95
COL7A1-207ENST00000467985 PNMA5Q96PV4 448 aa20.98■□□□□ 0.95
COL7A1-207ENST00000467985 NTPCRQ9BSD7 190 aaKnown RBP20.98■□□□□ 0.95
COL7A1-207ENST00000467985 MRPL4Q9BYD3 311 aaKnown RBP20.98■□□□□ 0.95
COL7A1-207ENST00000467985 RXFP1Q9HBX9 757 aa20.98■□□□□ 0.95
COL7A1-207ENST00000467985 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.98■□□□□ 0.95
COL7A1-207ENST00000467985 CHST7Q9NS84 486 aa20.98■□□□□ 0.95
COL7A1-207ENST00000467985 ARHGAP28Q9P2N2 729 aa20.98■□□□□ 0.95
COL7A1-207ENST00000467985 USP20Q9Y2K6 914 aa20.98■□□□□ 0.95
COL7A1-207ENST00000467985 ARIH1Q9Y4X5 557 aaPredicted RBP20.98■□□□□ 0.95
COL7A1-207ENST00000467985 SPDYE4A6NLX3 237 aa20.97■□□□□ 0.95
COL7A1-207ENST00000467985 TADA2AO75478 443 aa20.97■□□□□ 0.95
COL7A1-207ENST00000467985 UBA7P41226 1012 aa20.97■□□□□ 0.95
COL7A1-207ENST00000467985 SMTNP53814 917 aa20.97■□□□□ 0.95
COL7A1-207ENST00000467985 MAPK7Q13164 816 aa20.97■□□□□ 0.95
COL7A1-207ENST00000467985 TMEM119Q4V9L6 283 aa20.97■□□□□ 0.95
COL7A1-207ENST00000467985 FUT10Q6P4F1 479 aa20.97■□□□□ 0.95
COL7A1-207ENST00000467985 CALML4Q96GE6 196 aa20.97■□□□□ 0.95
COL7A1-207ENST00000467985 SF3B1O75533 1304 aaKnown RBP eCLIP20.97■□□□□ 0.95
COL7A1-207ENST00000467985 VPS37CA5D8V6 355 aaPredicted RBP20.96■□□□□ 0.95
COL7A1-207ENST00000467985 F8W810 466 aa20.96■□□□□ 0.95
COL7A1-207ENST00000467985 PTGESO14684 152 aa20.96■□□□□ 0.95
COL7A1-207ENST00000467985 PLA2G4BP0C869 781 aa20.96■□□□□ 0.95
COL7A1-207ENST00000467985 LONP1P36776 959 aaKnown RBP20.96■□□□□ 0.95
COL7A1-207ENST00000467985 C12orf76Q8N812 135 aaPredicted RBP20.96■□□□□ 0.95
COL7A1-207ENST00000467985 SPIRE2Q8WWL2 714 aa20.96■□□□□ 0.95
COL7A1-207ENST00000467985 ACO2Q99798 780 aaKnown RBP20.96■□□□□ 0.95
COL7A1-207ENST00000467985 POMKQ9H5K3 350 aa20.96■□□□□ 0.95
COL7A1-207ENST00000467985 TOPORSQ9NS56 1045 aaPredicted RBP20.96■□□□□ 0.95
COL7A1-207ENST00000467985 GDAQ9Y2T3 454 aa20.96■□□□□ 0.95
COL7A1-207ENST00000467985 TEX28O15482 410 aa20.95■□□□□ 0.94
COL7A1-207ENST00000467985 PLS3P13797 630 aa20.95■□□□□ 0.94
COL7A1-207ENST00000467985 YARSP54577 528 aaKnown RBP20.95■□□□□ 0.94
COL7A1-207ENST00000467985 SLC12A3P55017 1021 aa20.95■□□□□ 0.94
COL7A1-207ENST00000467985 ELAVL2Q12926 359 aaKnown RBP20.95■□□□□ 0.94
COL7A1-207ENST00000467985 STRN3Q13033 797 aa20.95■□□□□ 0.94
COL7A1-207ENST00000467985 HDAC7Q8WUI4 952 aa20.95■□□□□ 0.94
COL7A1-207ENST00000467985 PLIN2Q99541 437 aa20.95■□□□□ 0.94
COL7A1-207ENST00000467985 CCDC94Q9BW85 323 aaPredicted RBP20.95■□□□□ 0.94
COL7A1-207ENST00000467985 GPR62Q9BZJ7 368 aa20.95■□□□□ 0.94
COL7A1-207ENST00000467985 TSHZ2Q9NRE2 1034 aa20.95■□□□□ 0.94
COL7A1-207ENST00000467985 FNIP2Q9P278 1114 aa20.95■□□□□ 0.94
COL7A1-207ENST00000467985 CASTOR2A6NHX0 329 aa20.94■□□□□ 0.94
COL7A1-207ENST00000467985 H0YCG3 227 aa20.94■□□□□ 0.94
COL7A1-207ENST00000467985 GLUD1P00367 558 aa20.94■□□□□ 0.94
COL7A1-207ENST00000467985 GRM5P41594 1212 aa20.94■□□□□ 0.94
COL7A1-207ENST00000467985 NAB2Q15742 525 aa20.94■□□□□ 0.94
COL7A1-207ENST00000467985 ZNF568Q3ZCX4 644 aa20.94■□□□□ 0.94
COL7A1-207ENST00000467985 TMC5Q6UXY8 1006 aa20.94■□□□□ 0.94
COL7A1-207ENST00000467985 CYP26C1Q6V0L0 522 aa20.94■□□□□ 0.94
COL7A1-207ENST00000467985 C15orf39Q6ZRI6 1047 aa20.94■□□□□ 0.94
COL7A1-207ENST00000467985 GPR149Q86SP6 731 aa20.94■□□□□ 0.94
COL7A1-207ENST00000467985 CMASQ8NFW8 434 aaPredicted RBP20.94■□□□□ 0.94
COL7A1-207ENST00000467985 INTS4Q96HW7 963 aaKnown RBP20.94■□□□□ 0.94
COL7A1-207ENST00000467985 TCHPQ9BT92 498 aa20.94■□□□□ 0.94
COL7A1-207ENST00000467985 PTPRHQ9HD43 1115 aa20.94■□□□□ 0.94
COL7A1-207ENST00000467985 LARSQ9P2J5 1176 aaKnown RBP20.94■□□□□ 0.94
COL7A1-207ENST00000467985 RAPGEFL1Q9UHV5 662 aa20.94■□□□□ 0.94
COL7A1-207ENST00000467985 USTQ9Y2C2 406 aa20.94■□□□□ 0.94
COL7A1-207ENST00000467985 WDFY4Q6ZS81 3184 aa20.93■□□□□ 0.94
COL7A1-207ENST00000467985 SFI1A8K8P3 1242 aa20.93■□□□□ 0.94
COL7A1-207ENST00000467985 SLC16A4O15374 487 aa20.93■□□□□ 0.94
COL7A1-207ENST00000467985 BRD1O95696 1058 aa20.93■□□□□ 0.94
COL7A1-207ENST00000467985 MCF2P10911 925 aa20.93■□□□□ 0.94
COL7A1-207ENST00000467985 SCP2P22307 547 aa20.93■□□□□ 0.94
COL7A1-207ENST00000467985 ZXDAP98168 799 aa20.93■□□□□ 0.94
COL7A1-207ENST00000467985 RAD51AP2Q09MP3 1159 aa20.93■□□□□ 0.94
COL7A1-207ENST00000467985 SF3A1Q15459 793 aaKnown RBP20.93■□□□□ 0.94
COL7A1-207ENST00000467985 PTPN21Q16825 1174 aa20.93■□□□□ 0.94
COL7A1-207ENST00000467985 TAS1R3Q7RTX0 852 aa20.93■□□□□ 0.94
COL7A1-207ENST00000467985 RASSF8Q8NHQ8 419 aa20.93■□□□□ 0.94
COL7A1-207ENST00000467985 RIN2Q8WYP3 895 aaPredicted RBP20.93■□□□□ 0.94
COL7A1-207ENST00000467985 UROC1Q96N76 676 aa20.93■□□□□ 0.94
COL7A1-207ENST00000467985 PAAF1Q9BRP4 392 aa20.93■□□□□ 0.94
COL7A1-207ENST00000467985 TARS2Q9BW92 718 aaKnown RBP20.93■□□□□ 0.94
COL7A1-207ENST00000467985 CDT1Q9H211 546 aa20.93■□□□□ 0.94
COL7A1-207ENST00000467985 MAN1C1Q9NR34 630 aa20.93■□□□□ 0.94
COL7A1-207ENST00000467985 CDH22Q9UJ99 828 aa20.93■□□□□ 0.94
COL7A1-207ENST00000467985 ODF2LQ9ULJ1 636 aa20.93■□□□□ 0.94
COL7A1-207ENST00000467985 MYH11P35749 1972 aa20.93■□□□□ 0.94
COL7A1-207ENST00000467985 KIF4AO95239 1232 aa20.92■□□□□ 0.94
COL7A1-207ENST00000467985 WEE2P0C1S8 567 aa20.92■□□□□ 0.94
COL7A1-207ENST00000467985 PDXDC1Q6P996 788 aa20.92■□□□□ 0.94
COL7A1-207ENST00000467985 MPZL3Q6UWV2 235 aa20.92■□□□□ 0.94
COL7A1-207ENST00000467985 TRIM67Q6ZTA4 783 aa20.92■□□□□ 0.94
COL7A1-207ENST00000467985 PLCD3Q8N3E9 789 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms