RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 PLA2G4FQ68DD2 849 aa13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 FOXD4L3Q6VB84 417 aaPredicted RBP13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 OTUD6AQ7L8S5 288 aa13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 DDX53Q86TM3 631 aaKnown RBP13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 ECHDC2Q86YB7 292 aa13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 ZBTB44Q8NCP5 570 aa13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 LINC00301Q8NCQ3 95 aa13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 STAMQ92783 540 aa13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 SHDQ96IW2 340 aa13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 SCLT1Q96NL6 688 aa13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 GCOM2Q9BZD3 368 aaPredicted RBP13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 INO80BQ9C086 356 aaPredicted RBP13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 EPC1Q9H2F5 836 aa13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 ANKEF1Q9NU02 776 aa13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 TFIP11Q9UBB9 837 aaKnown RBP13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 EPS15L1Q9UBC2 864 aa13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 FBXO2Q9UK22 296 aaPredicted RBP13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 SMG5Q9UPR3 1016 aaKnown RBP13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 ATP6V1DQ9Y5K8 247 aa13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 SRPRBQ9Y5M8 271 aaKnown RBP13.19□□□□□ -0.3
SQSTM1-206ENST00000466342 MYH11P35749 1972 aa13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 CARNS1A5YM72 827 aa13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 TBC1D4O60343 1298 aa13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 LILRB5O75023 590 aa13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 LRRN2O75325 713 aa13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 XRCC6P12956 609 aaKnown RBP eCLIP13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 CDC25AP30304 524 aa13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 LONP1P36776 959 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 CLCN4P51793 760 aa13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 CSTF1Q05048 431 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 DNM1Q05193 864 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 GRIN1Q05586 938 aa13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 DMWDQ09019 674 aa13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 DRP2Q13474 957 aa13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 ZNF410Q86VK4 478 aa13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 NLRP7Q8WX94 980 aa13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 CEP170P1Q96L14 293 aa13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 SH2D3AQ9BRG2 576 aa13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 MMTAG2Q9BU76 263 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 FOXQ1Q9C009 403 aa13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 WDR6Q9NNW5 1121 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 SLC2A4RGQ9NR83 387 aa13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 CHST12Q9NRB3 414 aa13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 SPATA6Q9NWH7 488 aaPredicted RBP13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 ZSCAN32Q9NX65 697 aa13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 SUCLA2Q9P2R7 463 aaPredicted RBP13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 CFAP45Q9UL16 551 aa13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 RBM19Q9Y4C8 960 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-206ENST00000466342 A0A0U1RQF3 1178 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 SLC30A4O14863 429 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 ZBTB39O15060 712 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 SPTLC2O15270 562 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 SLC26A4O43511 780 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 PPP6R2O75170 966 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 HOXB3P14651 431 aaPredicted RBP13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 KLRC2P26717 231 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 RARRES1P49788 294 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 NPEPPSP55786 919 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 ECM1Q16610 540 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 XKR9Q5GH70 373 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 HYIQ5T013 277 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 CYP26C1Q6V0L0 522 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 KRI1Q8N9T8 703 aaKnown RBP13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 CMASQ8NFW8 434 aaPredicted RBP13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 NETO1Q8TDF5 533 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 HELQQ8TDG4 1101 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 SLC7A3Q8WY07 619 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 NELL1Q92832 810 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 IGSF21Q96ID5 467 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 ZNF668Q96K58 619 aaPredicted RBP13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 KLHL5Q96PQ7 755 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 NACC1Q96RE7 527 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 MRPL9Q9BYD2 267 aaKnown RBP13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 BCO2Q9BYV7 579 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 CSRNP2Q9H175 543 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 DHX33Q9H6R0 707 aaKnown RBP13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 PARD6AQ9NPB6 346 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 DACT1Q9NYF0 836 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 ANGPTL2Q9UKU9 493 aa13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 CIZ1Q9ULV3 898 aaPredicted RBP13.17□□□□□ -0.3
SQSTM1-206ENST00000466342 A0A087WZ62 844 aa13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 CCDC195A0A1B0GUA6 201 aa13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 KANSL1LA0AUZ9 987 aa13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 GAS2O43903 313 aaKnown RBP13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 RFC5P40937 340 aa13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 UBA7P41226 1012 aa13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 KRT85P78386 507 aa13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 TMEM173Q86WV6 379 aaPredicted RBP13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 RHPN2Q8IUC4 686 aa13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 ZNF579Q8NAF0 562 aaKnown RBP13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 RNF169Q8NCN4 708 aa13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 PIGOQ8TEQ8 1089 aa13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 COL26A1Q96A83 441 aa13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 CCDC43Q96MW1 224 aaKnown RBP13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 MYADMQ96S97 322 aa13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 FDXACB1Q9BRP7 624 aaPredicted RBP13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 TRAIPQ9BWF2 469 aa13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 EMILIN2Q9BXX0 1053 aa13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 RHOBTB2Q9BYZ6 727 aa13.16□□□□□ -0.3
SQSTM1-206ENST00000466342 CCSER1Q9C0I3 900 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms