RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 ASAP2O43150 1006 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 EXOC3O60645 756 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 CABYRO75952 493 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 ADRB2P07550 413 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 PAX7P23759 505 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 PPP1R2P41236 205 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 MATR3P43243 847 aaKnown RBP eCLIP11.23□□□□□ -0.61
USP39-210ENST00000459775 ZNF75DP51815 510 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 PRPF4BQ13523 1007 aaKnown RBP11.23□□□□□ -0.61
USP39-210ENST00000459775 SNX17Q15036 470 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 EDRF1Q3B7T1 1238 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 TMEM192Q8IY95 271 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 TTC30BQ8N4P2 665 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 SPC24Q8NBT2 197 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 ACO2Q99798 780 aaKnown RBP11.23□□□□□ -0.61
USP39-210ENST00000459775 FAM213AQ9BRX8 229 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 TCHPQ9BT92 498 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 UBE2OQ9C0C9 1292 aaKnown RBP11.23□□□□□ -0.61
USP39-210ENST00000459775 TMEM134Q9H6X4 195 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 RNF19AQ9NV58 838 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 UBE4BO95155 1302 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 PHLPP2Q6ZVD8 1323 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 ACKR2O00590 384 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 CETN3O15182 167 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 KIF1CO43896 1103 aaKnown RBP11.23□□□□□ -0.61
USP39-210ENST00000459775 TSPAN1O60635 241 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 DARSP14868 501 aaKnown RBP11.23□□□□□ -0.61
USP39-210ENST00000459775 ARF4P18085 180 aaPredicted RBP11.23□□□□□ -0.61
USP39-210ENST00000459775 TNFSF9P41273 254 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 MAGEA10P43363 369 aaPredicted RBP11.23□□□□□ -0.61
USP39-210ENST00000459775 MTIF2P46199 727 aaKnown RBP11.23□□□□□ -0.61
USP39-210ENST00000459775 EFNA5P52803 228 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 COPB1P53618 953 aaKnown RBP11.23□□□□□ -0.61
USP39-210ENST00000459775 UBASH3AP57075 661 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 TPM4P67936 248 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 DLG4P78352 724 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 ALCAMQ13740 583 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 CCDC40Q4G0X9 1142 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 MIIPQ5JXC2 388 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 ZNF618Q5T7W0 954 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 SCARA3Q6AZY7 606 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 SESTD1Q86VW0 696 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 ZC3H3Q8IXZ2 948 aaKnown RBP11.23□□□□□ -0.61
USP39-210ENST00000459775 SLC43A3Q8NBI5 491 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 PLEKHO2Q8TD55 490 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 ELMO3Q96BJ8 720 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 POP1Q99575 1024 aaKnown RBP11.23□□□□□ -0.61
USP39-210ENST00000459775 TUBGCP2Q9BSJ2 902 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 CELF4Q9BZC1 486 aaKnown RBP11.23□□□□□ -0.61
USP39-210ENST00000459775 MMRN2Q9H8L6 949 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 NOC2LQ9Y3T9 749 aaKnown RBP11.23□□□□□ -0.61
USP39-210ENST00000459775 FRMPD3Q5JV73 1810 aa11.23□□□□□ -0.61
USP39-210ENST00000459775 UMODL1Q5DID0 1318 aa11.22□□□□□ -0.61
USP39-210ENST00000459775 ABLIM1O14639 778 aa11.22□□□□□ -0.61
USP39-210ENST00000459775 TRIM49P0CI25 452 aa11.22□□□□□ -0.61
USP39-210ENST00000459775 TRIM49CP0CI26 452 aa11.22□□□□□ -0.61
USP39-210ENST00000459775 IBSPP21815 317 aaPredicted RBP11.22□□□□□ -0.61
USP39-210ENST00000459775 EIF4BP23588 611 aaKnown RBP11.22□□□□□ -0.61
USP39-210ENST00000459775 HOXA11P31270 313 aaPredicted RBP11.22□□□□□ -0.61
USP39-210ENST00000459775 KLK7P49862 253 aa11.22□□□□□ -0.61
USP39-210ENST00000459775 CDK7P50613 346 aa11.22□□□□□ -0.61
USP39-210ENST00000459775 MRPS6P82932 125 aaKnown RBP11.22□□□□□ -0.61
USP39-210ENST00000459775 APBA1Q02410 837 aa11.22□□□□□ -0.61
USP39-210ENST00000459775 TRIM71Q2Q1W2 868 aaKnown RBP11.22□□□□□ -0.61
USP39-210ENST00000459775 ATF7IP2Q5U623 682 aa11.22□□□□□ -0.61
USP39-210ENST00000459775 TAF2Q6P1X5 1199 aa11.22□□□□□ -0.61
USP39-210ENST00000459775 KAT6AQ92794 2004 aa11.22□□□□□ -0.61
USP39-210ENST00000459775 MRPL4Q9BYD3 311 aaKnown RBP11.22□□□□□ -0.61
USP39-210ENST00000459775 GCOM2Q9BZD3 368 aaPredicted RBP11.22□□□□□ -0.61
USP39-210ENST00000459775 CXCL16Q9H2A7 254 aa11.22□□□□□ -0.61
USP39-210ENST00000459775 AGO3Q9H9G7 860 aaKnown RBP11.22□□□□□ -0.61
USP39-210ENST00000459775 LIMA1Q9UHB6 759 aaKnown RBP11.22□□□□□ -0.61
USP39-210ENST00000459775 EXOC7Q9UPT5 735 aa11.22□□□□□ -0.61
USP39-210ENST00000459775 N4BP3O15049 544 aa11.21□□□□□ -0.61
USP39-210ENST00000459775 LRRN2O75325 713 aa11.21□□□□□ -0.61
USP39-210ENST00000459775 IPO7O95373 1038 aaKnown RBP11.21□□□□□ -0.61
USP39-210ENST00000459775 ZSCAN20P17040 1043 aaPredicted RBP11.21□□□□□ -0.61
USP39-210ENST00000459775 DCAF17Q5H9S7 520 aaPredicted RBP11.21□□□□□ -0.61
USP39-210ENST00000459775 LMBRD2Q68DH5 695 aaPredicted RBP11.21□□□□□ -0.61
USP39-210ENST00000459775 SARM1Q6SZW1 724 aa11.21□□□□□ -0.61
USP39-210ENST00000459775 CRELD2Q6UXH1 353 aaPredicted RBP11.21□□□□□ -0.61
USP39-210ENST00000459775 CATSPER4Q7RTX7 472 aa11.21□□□□□ -0.61
USP39-210ENST00000459775 FILIP1Q7Z7B0 1213 aa11.21□□□□□ -0.61
USP39-210ENST00000459775 FAM186BQ8IYM0 893 aa11.21□□□□□ -0.61
USP39-210ENST00000459775 THNSL1Q8IYQ7 743 aa11.21□□□□□ -0.61
USP39-210ENST00000459775 CCDC127Q96BQ5 260 aa11.21□□□□□ -0.61
USP39-210ENST00000459775 HVCN1Q96D96 273 aa11.21□□□□□ -0.61
USP39-210ENST00000459775 MSTO1Q9BUK6 570 aa11.21□□□□□ -0.61
USP39-210ENST00000459775 C2orf40Q9H1Z8 148 aa11.21□□□□□ -0.61
USP39-210ENST00000459775 TOPORSQ9NS56 1045 aaPredicted RBP11.21□□□□□ -0.61
USP39-210ENST00000459775 ZMYND8Q9ULU4 1186 aaPredicted RBP11.21□□□□□ -0.61
USP39-210ENST00000459775 HES2Q9Y543 173 aa11.21□□□□□ -0.61
USP39-210ENST00000459775 A0A0B4J269 797 aa11.21□□□□□ -0.62
USP39-210ENST00000459775 CCDC189A1A4V9 331 aa11.21□□□□□ -0.62
USP39-210ENST00000459775 H0YCG3 227 aa11.21□□□□□ -0.62
USP39-210ENST00000459775 CLDN3O15551 220 aa11.21□□□□□ -0.62
USP39-210ENST00000459775 GHRP10912 638 aa11.21□□□□□ -0.62
USP39-210ENST00000459775 GOLGA8FQ08AF8 430 aa11.21□□□□□ -0.62
USP39-210ENST00000459775 GOLGA8DPQ0D2H9 430 aa11.21□□□□□ -0.62
USP39-210ENST00000459775 NFX1Q12986 1120 aaKnown RBP11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms