RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 YWHABP31946 246 aaKnown RBP12.68□□□□□ -0.38
MSH6-204ENST00000445503 ERMARDQ5T6L9 678 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 IZUMO3Q5VZ72 239 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 KCNH7Q9NS40 1196 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 ADAM22Q9P0K1 906 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 SLC12A6Q9UHW9 1150 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 TMEM59LQ9UK28 342 aa12.68□□□□□ -0.38
MSH6-204ENST00000445503 SGK1O00141 431 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 IGF2BP3O00425 579 aaKnown RBP eCLIP12.67□□□□□ -0.38
MSH6-204ENST00000445503 RIPK2O43353 540 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 CHRNA5P30532 468 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 CYFIP1Q7L576 1253 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 EPM2AIP1Q7L775 607 aaPredicted RBP12.67□□□□□ -0.38
MSH6-204ENST00000445503 SPATA21Q7Z572 469 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 LRRC8CQ8TDW0 803 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 FAM167BQ9BTA0 163 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 DNAJC18Q9H819 358 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 FAM198AQ9UFP1 575 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 VAV3Q9UKW4 847 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 IGKV6D-41A0A0C4DH26 115 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 MTERF2Q49AM1 385 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 TMEM270Q6UE05 265 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 YTHDF3Q7Z739 585 aaKnown RBP12.67□□□□□ -0.38
MSH6-204ENST00000445503 PRUNE1Q86TP1 453 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 ANKRD35Q8N283 1001 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 RASGEF1CQ8N431 466 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 FBXL13Q8NEE6 735 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 TAS1R2Q8TE23 839 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 SNF8Q96H20 258 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 HSD17B14Q9BPX1 270 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 TOGARAM1Q9Y4F4 1720 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 ECM29Q5VYK3 1845 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 DIAPH2O60879 1101 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 RARGP13631 454 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 JAM2P57087 298 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 DCAF12L1Q5VU92 463 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 FOXR2Q6PJQ5 311 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 C15orf52Q6ZUT6 534 aaKnown RBP12.67□□□□□ -0.38
MSH6-204ENST00000445503 C4orf33Q8N1A6 199 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 ZSWIM2Q8NEG5 633 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 MASTLQ96GX5 879 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 SLC24A3Q9HC58 644 aa12.67□□□□□ -0.38
MSH6-204ENST00000445503 KRT1P04264 644 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 COL23A1Q86Y22 540 aaPredicted RBP12.66□□□□□ -0.38
MSH6-204ENST00000445503 ACSF2Q96CM8 615 aaPredicted RBP12.66□□□□□ -0.38
MSH6-204ENST00000445503 ZDHHC15Q96MV8 337 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 SMC6Q96SB8 1091 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 IQCGQ9H095 443 aaKnown RBP12.66□□□□□ -0.38
MSH6-204ENST00000445503 ALG13Q9NP73 1137 aaKnown RBP12.66□□□□□ -0.38
MSH6-204ENST00000445503 CHST7Q9NS84 486 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 ZBTB12Q9Y330 459 aaPredicted RBP12.66□□□□□ -0.38
MSH6-204ENST00000445503 ZHX2Q9Y6X8 837 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 LRRD1A4D1F6 860 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 ANKRD63C9JTQ0 380 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 H0YGN5 161 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 RALAP11233 206 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 SPIRE1Q08AE8 756 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 LLGL2Q6P1M3 1020 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 TTC27Q6P3X3 843 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 EIF1ADQ8N9N8 165 aaKnown RBP12.66□□□□□ -0.38
MSH6-204ENST00000445503 SLC5A5Q92911 643 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 NFS1Q9Y697 457 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 PLS3P13797 630 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 CYP11B1P15538 503 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 ECHS1P30084 290 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 P3H4Q92791 437 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 VTI1AQ96AJ9 217 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 STAMBPL1Q96FJ0 436 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 SLC26A4O43511 780 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 C21orf2O43822 256 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 CREB1P16220 341 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 ACOT2P49753 483 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 PLCB4Q15147 1175 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 SLFN11Q7Z7L1 901 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 CCDC89Q8N998 374 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 PCDHB18PQ96TA0 734 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 RMDN3Q96TC7 470 aa12.66□□□□□ -0.38
MSH6-204ENST00000445503 GGPS1O95749 300 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 RRM1P23921 792 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 CNGA1P29973 690 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 CDC25CP30307 473 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 FNTAP49354 379 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 SPRED3Q2MJR0 410 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 DEPTORQ8TB45 409 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 LENG9Q96B70 501 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 MXRA8Q9BRK3 442 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 PPP1R12CQ9BZL4 782 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 DCTN4Q9UJW0 460 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 STXBP5LQ9Y2K9 1186 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 COL4A1P02462 1669 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 APBA3O96018 575 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 RFX1P22670 979 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 GCKP35557 465 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 AUHQ13825 339 aaKnown RBP12.65□□□□□ -0.38
MSH6-204ENST00000445503 SYCP2LQ5T4T6 812 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 NSMCE1Q8WV22 266 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 PRCCQ92733 491 aaPredicted RBP12.65□□□□□ -0.38
MSH6-204ENST00000445503 GMCL1Q96IK5 515 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 KDM4CQ9H3R0 1056 aa12.65□□□□□ -0.38
MSH6-204ENST00000445503 GABBR1Q9UBS5 961 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms