RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 LINC01559Q495D7 138 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 NOTUMQ6P988 496 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 TMC5Q6UXY8 1006 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 OTOP3Q7RTS5 596 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 TMEM173Q86WV6 379 aaPredicted RBP8.63□□□□□ -1.03
VPS50-204ENST00000438395 C12orf76Q8N812 135 aaPredicted RBP8.63□□□□□ -1.03
VPS50-204ENST00000438395 DYDC2Q96IM9 177 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 TMEM175Q9BSA9 504 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 APOL6Q9BWW8 343 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 NRDE2Q9H7Z3 1164 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 IFT122Q9HBG6 1241 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 RGL1Q9NZL6 768 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 DNAJB4Q9UDY4 337 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 SSX2IPQ9Y2D8 614 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 PRG3Q9Y2Y8 225 aaPredicted RBP8.63□□□□□ -1.03
VPS50-204ENST00000438395 IRAK3Q9Y616 596 aa8.63□□□□□ -1.03
VPS50-204ENST00000438395 ATG2AQ2TAZ0 1938 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 PLXNA4Q9HCM2 1894 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 MEIS3P2A8K0S8 358 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 SPTLC1O15269 473 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 POMCP01189 267 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 AXLP30530 894 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 MLH1P40692 756 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 OR1G1P47890 313 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 AGMOQ6ZNB7 445 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 FERMT3Q86UX7 667 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 ZNF280BQ86YH2 543 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 PRSS33Q8NF86 280 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 SNIP1Q8TAD8 396 aaKnown RBP8.62□□□□□ -1.03
VPS50-204ENST00000438395 BCL7CQ8WUZ0 217 aaPredicted RBP8.62□□□□□ -1.03
VPS50-204ENST00000438395 STAMQ92783 540 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 RPS6KC1Q96S38 1066 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 CEP89Q96ST8 783 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 EIF2AK1Q9BQI3 630 aaKnown RBP8.62□□□□□ -1.03
VPS50-204ENST00000438395 LIMD1Q9UGP4 676 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 CDH22Q9UJ99 828 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 FBXL21Q9UKT6 434 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 TPCN1Q9ULQ1 816 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 PCDHA12Q9UN75 941 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 USTQ9Y2C2 406 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 LOXHD1Q8IVV2 1947 aa8.62□□□□□ -1.03
VPS50-204ENST00000438395 FNDC1Q4ZHG4 1894 aaPredicted RBP8.62□□□□□ -1.03
VPS50-204ENST00000438395 ARL5CA6NH57 179 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 LRRIQ4A6NIV6 560 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 TSPAN1O60635 241 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 USO1O60763 962 aaKnown RBP8.61□□□□□ -1.03
VPS50-204ENST00000438395 GLUD1P00367 558 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 ASGR2P07307 311 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 NCLP19338 710 aaKnown RBP8.61□□□□□ -1.03
VPS50-204ENST00000438395 AVPR2P30518 371 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 TXKP42681 527 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 GLUD2P49448 558 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 VCPP55072 806 aaKnown RBP8.61□□□□□ -1.03
VPS50-204ENST00000438395 PTENP60484 403 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 CREMQ03060 361 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 NR5A1Q13285 461 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 GNL2Q13823 731 aaKnown RBP8.61□□□□□ -1.03
VPS50-204ENST00000438395 MRPL10Q7Z7H8 261 aaKnown RBP8.61□□□□□ -1.03
VPS50-204ENST00000438395 ZBTB8OSQ8IWT0 167 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 DIS3L2Q8IYB7 885 aaKnown RBP8.61□□□□□ -1.03
VPS50-204ENST00000438395 ZDHHC14Q8IZN3 488 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 HAS1Q92839 578 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 ATOH1Q92858 354 aaPredicted RBP8.61□□□□□ -1.03
VPS50-204ENST00000438395 GTF3C6Q969F1 213 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 ASIC4Q96FT7 647 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 GAD1Q99259 594 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 HERC2P3Q9BVR0 1158 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 COLEC11Q9BWP8 271 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 CSRNP2Q9H175 543 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 POLR3FQ9H1D9 316 aaPredicted RBP8.61□□□□□ -1.03
VPS50-204ENST00000438395 TTC12Q9H892 705 aaPredicted RBP8.61□□□□□ -1.03
VPS50-204ENST00000438395 MINDY3Q9H8M7 445 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 GJB4Q9NTQ9 266 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 ANKEF1Q9NU02 776 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 WRAP73Q9P2S5 460 aaPredicted RBP8.61□□□□□ -1.03
VPS50-204ENST00000438395 IPPQ9Y573 584 aa8.61□□□□□ -1.03
VPS50-204ENST00000438395 PTPRZ1P23471 2315 aaPredicted RBP8.61□□□□□ -1.03
VPS50-204ENST00000438395 RIF1Q5UIP0 2472 aaKnown RBP8.61□□□□□ -1.03
VPS50-204ENST00000438395 NRP1O14786 923 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 DDHD2O94830 711 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 LYPLA2O95372 231 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 BRD1O95696 1058 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 AVPP01185 164 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 SOD2P04179 222 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 CNPP09543 421 aaKnown RBP8.6□□□□□ -1.03
VPS50-204ENST00000438395 ATP2B1P20020 1258 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 HOXA11P31270 313 aaPredicted RBP8.6□□□□□ -1.03
VPS50-204ENST00000438395 GBP2P32456 591 aaPredicted RBP8.6□□□□□ -1.03
VPS50-204ENST00000438395 SCNN1GP51170 649 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 CLCN4P51793 760 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 SH3BP2P78314 561 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 CAPSQ13938 189 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 PTPRNQ16849 979 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 UBXN11Q5T124 520 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 C15orf39Q6ZRI6 1047 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 GPR149Q86SP6 731 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 NECAB1Q8N987 351 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 MCPH1Q8NEM0 835 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 ERMNQ8TAM6 284 aa8.6□□□□□ -1.03
VPS50-204ENST00000438395 SLC22A17Q8WUG5 538 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms