RNA–Protein interactions for RNA: ENST00000428445.1

VARS-216, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 863 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-216ENST00000428445 LIG1P18858 919 aa18.34■□□□□ 0.53
VARS-216ENST00000428445 GUCY1B3Q02153 619 aa18.34■□□□□ 0.53
VARS-216ENST00000428445 PCBP1Q15365 356 aaKnown RBP eCLIP18.34■□□□□ 0.536e-7■■■■□ 21.8
VARS-216ENST00000428445 SPECC1Q5M775 1068 aa18.34■□□□□ 0.53
VARS-216ENST00000428445 CEP57Q86XR8 500 aa18.34■□□□□ 0.53
VARS-216ENST00000428445 DIS3L2Q8IYB7 885 aaKnown RBP18.34■□□□□ 0.53
VARS-216ENST00000428445 NSUN7Q8NE18 718 aaKnown RBP18.34■□□□□ 0.53
VARS-216ENST00000428445 GPR152Q8TDT2 470 aa18.34■□□□□ 0.53
VARS-216ENST00000428445 BSNDQ8WZ55 320 aa18.34■□□□□ 0.53
VARS-216ENST00000428445 WASF1Q92558 559 aa18.34■□□□□ 0.53
VARS-216ENST00000428445 NKD2Q969F2 451 aaPredicted RBP18.34■□□□□ 0.53
VARS-216ENST00000428445 SNTG2Q9NY99 539 aa18.34■□□□□ 0.53
VARS-216ENST00000428445 EPS15L1Q9UBC2 864 aa18.34■□□□□ 0.53
VARS-216ENST00000428445 ADAM12O43184 909 aa18.33■□□□□ 0.52
VARS-216ENST00000428445 EDN1P05305 212 aa18.33■□□□□ 0.52
VARS-216ENST00000428445 DCNP07585 359 aaKnown RBP18.33■□□□□ 0.52
VARS-216ENST00000428445 GRIK3Q13003 919 aa18.33■□□□□ 0.52
VARS-216ENST00000428445 CATSPER3Q86XQ3 398 aa18.33■□□□□ 0.52
VARS-216ENST00000428445 NOSTRINQ8IVI9 506 aa18.33■□□□□ 0.52
VARS-216ENST00000428445 ADSSL1Q8N142 457 aa18.33■□□□□ 0.52
VARS-216ENST00000428445 STAMQ92783 540 aa18.33■□□□□ 0.52
VARS-216ENST00000428445 GTF3C6Q969F1 213 aa18.33■□□□□ 0.52
VARS-216ENST00000428445 NFKBIZQ9BYH8 718 aa18.33■□□□□ 0.52
VARS-216ENST00000428445 PRKD2Q9BZL6 878 aa18.33■□□□□ 0.52
VARS-216ENST00000428445 BRMS1Q9HCU9 246 aa18.33■□□□□ 0.52
VARS-216ENST00000428445 WNT16Q9UBV4 365 aa18.33■□□□□ 0.52
VARS-216ENST00000428445 COL4A3Q01955 1670 aa18.33■□□□□ 0.52
VARS-216ENST00000428445 PTGESO14684 152 aa18.32■□□□□ 0.52
VARS-216ENST00000428445 KIF4AO95239 1232 aa18.32■□□□□ 0.52
VARS-216ENST00000428445 LAMP2P13473 410 aa18.32■□□□□ 0.52
VARS-216ENST00000428445 MCM7P33993 719 aa18.32■□□□□ 0.52
VARS-216ENST00000428445 ST3GAL1Q11201 340 aa18.32■□□□□ 0.52
VARS-216ENST00000428445 HSP90AA2PQ14568 343 aaPredicted RBP18.32■□□□□ 0.52
VARS-216ENST00000428445 FAM171A1Q5VUB5 890 aa18.32■□□□□ 0.52
VARS-216ENST00000428445 GRASPQ7Z6J2 395 aaPredicted RBP18.32■□□□□ 0.52
VARS-216ENST00000428445 HACE1Q8IYU2 909 aa18.32■□□□□ 0.52
VARS-216ENST00000428445 RTP3Q9BQQ7 232 aa18.32■□□□□ 0.52
VARS-216ENST00000428445 CLSTN3Q9BQT9 956 aa18.32■□□□□ 0.52
VARS-216ENST00000428445 PLEKHA4Q9H4M7 779 aa18.32■□□□□ 0.52
VARS-216ENST00000428445 TBC1D17Q9HA65 648 aa18.32■□□□□ 0.52
VARS-216ENST00000428445 FNIP2Q9P278 1114 aa18.32■□□□□ 0.52
VARS-216ENST00000428445 NUMBLQ9Y6R0 609 aa18.32■□□□□ 0.52
VARS-216ENST00000428445 DCHS1Q96JQ0 3298 aa18.32■□□□□ 0.52
VARS-216ENST00000428445 TRIP11Q15643 1979 aa18.31■□□□□ 0.52
VARS-216ENST00000428445 VWA8A3KMH1 1905 aa18.31■□□□□ 0.52
VARS-216ENST00000428445 WDR87Q6ZQQ6 2873 aa18.31■□□□□ 0.52
VARS-216ENST00000428445 ZMYND10O75800 440 aa18.31■□□□□ 0.52
VARS-216ENST00000428445 ANKRD1Q15327 319 aa18.31■□□□□ 0.52
VARS-216ENST00000428445 EEF1DP3Q658K8 133 aa18.31■□□□□ 0.52
VARS-216ENST00000428445 CYP26C1Q6V0L0 522 aa18.31■□□□□ 0.52
VARS-216ENST00000428445 LNX1Q8TBB1 728 aaPredicted RBP18.31■□□□□ 0.52
VARS-216ENST00000428445 HDAC7Q8WUI4 952 aa18.31■□□□□ 0.52
VARS-216ENST00000428445 RHOBTB2Q9BYZ6 727 aa18.31■□□□□ 0.52
VARS-216ENST00000428445 FZD8Q9H461 694 aa18.31■□□□□ 0.52
VARS-216ENST00000428445 PDZD7Q9H5P4 517 aa18.31■□□□□ 0.52
VARS-216ENST00000428445 DPP7Q9UHL4 492 aa18.31■□□□□ 0.52
VARS-216ENST00000428445 R4GN57 208 aa18.31■□□□□ 0.52
VARS-216ENST00000428445 CCL16O15467 120 aa18.3■□□□□ 0.52
VARS-216ENST00000428445 LRRN2O75325 713 aa18.3■□□□□ 0.52
VARS-216ENST00000428445 SRFP11831 508 aa18.3■□□□□ 0.52
VARS-216ENST00000428445 RFX1P22670 979 aa18.3■□□□□ 0.52
VARS-216ENST00000428445 ANAPC15P60006 121 aa18.3■□□□□ 0.52
VARS-216ENST00000428445 TUSC3Q13454 348 aa18.3■□□□□ 0.52
VARS-216ENST00000428445 HTR4Q13639 388 aa18.3■□□□□ 0.52
VARS-216ENST00000428445 ZNF174Q15697 407 aa18.3■□□□□ 0.52
VARS-216ENST00000428445 TMEM132AQ24JP5 1023 aa18.3■□□□□ 0.52
VARS-216ENST00000428445 ELMSAN1Q6PJG2 1045 aa18.3■□□□□ 0.52
VARS-216ENST00000428445 PARM1Q6UWI2 310 aa18.3■□□□□ 0.52
VARS-216ENST00000428445 FGF14Q92915 247 aa18.3■□□□□ 0.52
VARS-216ENST00000428445 KIFC3Q9BVG8 833 aa18.3■□□□□ 0.52
VARS-216ENST00000428445 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.3■□□□□ 0.52
VARS-216ENST00000428445 PRMT7Q9NVM4 692 aaPredicted RBP18.3■□□□□ 0.52
VARS-216ENST00000428445 ZDHHC7Q9NXF8 308 aa18.3■□□□□ 0.52
VARS-216ENST00000428445 GDAQ9Y2T3 454 aa18.3■□□□□ 0.52
VARS-216ENST00000428445 ANHXE9PGG2 379 aa18.29■□□□□ 0.52
VARS-216ENST00000428445 EIF5BO60841 1220 aaKnown RBP18.29■□□□□ 0.52
VARS-216ENST00000428445 RECQL4O94761 1208 aa18.29■□□□□ 0.52
VARS-216ENST00000428445 PAPLNO95428 1278 aa18.29■□□□□ 0.52
VARS-216ENST00000428445 XRCC6P12956 609 aaKnown RBP eCLIP18.29■□□□□ 0.528e-6■■□□□ 12.6
VARS-216ENST00000428445 FSHRP23945 695 aa18.29■□□□□ 0.52
VARS-216ENST00000428445 GPC5P78333 572 aa18.29■□□□□ 0.52
VARS-216ENST00000428445 NAB2Q15742 525 aa18.29■□□□□ 0.52
VARS-216ENST00000428445 CDCA2Q69YH5 1023 aaPredicted RBP18.29■□□□□ 0.52
VARS-216ENST00000428445 PPP4R3CPQ6ZMV5 832 aa18.29■□□□□ 0.52
VARS-216ENST00000428445 TTPALQ9BTX7 342 aa18.29■□□□□ 0.52
VARS-216ENST00000428445 FOXQ1Q9C009 403 aa18.29■□□□□ 0.52
VARS-216ENST00000428445 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.29■□□□□ 0.52
VARS-216ENST00000428445 POLIQ9UNA4 740 aa18.29■□□□□ 0.52
VARS-216ENST00000428445 MYH15Q9Y2K3 1946 aa18.29■□□□□ 0.52
VARS-216ENST00000428445 NOTCH4Q99466 2003 aa18.28■□□□□ 0.52
VARS-216ENST00000428445 SF3B1O75533 1304 aaKnown RBP eCLIP18.28■□□□□ 0.52
VARS-216ENST00000428445 THP07101 528 aa18.28■□□□□ 0.52
VARS-216ENST00000428445 GLULP15104 373 aa18.28■□□□□ 0.52
VARS-216ENST00000428445 PRPF4BQ13523 1007 aaKnown RBP18.28■□□□□ 0.52
VARS-216ENST00000428445 PSMD5Q16401 504 aa18.28■□□□□ 0.52
VARS-216ENST00000428445 ECM1Q16610 540 aa18.28■□□□□ 0.52
VARS-216ENST00000428445 GLRA4Q5JXX5 417 aa18.28■□□□□ 0.52
VARS-216ENST00000428445 PADI6Q6TGC4 694 aa18.28■□□□□ 0.52
VARS-216ENST00000428445 ZBTB8OSQ8IWT0 167 aa18.28■□□□□ 0.52
VARS-216ENST00000428445 ITFG1Q8TB96 612 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms