RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 CCNYL1Q8N7R7 359 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 SNX31Q8N9S9 440 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 ABTB1Q969K4 478 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 OTUD5Q96G74 571 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 USP28Q96RU2 1077 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 POLR3FQ9H1D9 316 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 PLEKHA5Q9HAU0 1116 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 GEMIN8Q9NWZ8 242 aaKnown RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 CNOT8Q9UFF9 292 aaKnown RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 CCDC22O60826 627 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 JAK1P23458 1154 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 ALDH7A1P49419 539 aaKnown RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 ETF1P62495 437 aaKnown RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 MRPS15P82914 257 aaKnown RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 LRRC41Q15345 812 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 LRRC24Q50LG9 513 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 FAM102AQ5T9C2 384 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 CATSPER3Q86XQ3 398 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 KRT35Q92764 455 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 VPS50Q96JG6 964 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 PRPF18Q99633 342 aaKnown RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 FAM213AQ9BRX8 229 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 JPH1Q9HDC5 661 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 RAD18Q9NS91 495 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 FAM217BQ9NTX9 383 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 RBAKQ9NYW8 714 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 PIN4Q9Y237 131 aaKnown RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 NLRP1Q9C000 1473 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 ITSN1Q15811 1721 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 C3orf70A6NLC5 250 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 MAGEB2O15479 319 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 ERVK-10P10266 1014 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 LIG3P49916 1009 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 PMS2P54278 862 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 SEMA3FQ13275 785 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 AASDHQ4L235 1098 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 RCSD1Q6JBY9 416 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 APOA5Q6Q788 366 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 GLB1LQ6UWU2 654 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 PASD1Q8IV76 773 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 HS6ST3Q8IZP7 471 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 SSH3Q8TE77 659 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 PANX2Q96RD6 677 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 PKD2L2Q9NZM6 624 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 NEO1Q92859 1461 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 H7C4K7 107 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 LCP1P13796 627 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 NUP62P37198 522 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 FAM133BQ5BKY9 247 aaKnown RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 C1orf146Q5VVC0 180 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 IL31Q6EBC2 164 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 CARD9Q9H257 536 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 ATP11BQ9Y2G3 1177 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 PFASO15067 1338 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 GRK3P35626 688 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 BCAR1P56945 870 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 PSMC5P62195 406 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 TGM3Q08188 693 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 C2orf54Q08AI8 447 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 TWF1Q12792 350 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 POLD3Q15054 466 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 UBE2SQ16763 222 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 LRRC8EQ6NSJ5 796 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 PADI6Q6TGC4 694 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 CALML6Q8TD86 181 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 SLITRK1Q96PX8 696 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 NUP85Q9BW27 656 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 NDST4Q9H3R1 872 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 DHX35Q9H5Z1 703 aaKnown RBP7.23□□□□□ -1.25
SCN1A-204ENST00000423058 ENTPD7Q9NQZ7 604 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 GID8Q9NWU2 228 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 RGS12O14924 1447 aa7.23□□□□□ -1.25
SCN1A-204ENST00000423058 C4BPBP20851 252 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 PCSK1P29120 753 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 ADORA2BP29275 332 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 GUCY1A2P33402 732 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 PEX19P40855 299 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 GPSM2P81274 684 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 TMEM132DQ14C87 1099 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 EZH2Q15910 746 aaKnown RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 SV2CQ496J9 727 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 LRRC23Q53EV4 343 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 FAM173BQ6P4H8 233 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 UNC13DQ70J99 1090 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 SLC35F6Q8N357 371 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 SPON1Q9HCB6 807 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 BLOC1S6Q9UL45 172 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 CAB39Q9Y376 341 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 SLC30A1Q9Y6M5 507 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 A0A0G2JND7 137 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 CLASP2O75122 1294 aaKnown RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 GADD45BO75293 160 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 ADORA1P30542 326 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 MAPRE1Q15691 268 aaKnown RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 TRIM65Q6PJ69 517 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 TRIM69Q86WT6 500 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 ANKRD49Q8WVL7 239 aa7.22□□□□□ -1.25
SCN1A-204ENST00000423058 LSG1Q9H089 658 aaKnown RBP7.22□□□□□ -1.25
SCN1A-204ENST00000423058 BHMT2Q9H2M3 363 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms