RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 RUSC1Q9BVN2 902 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 INTS2Q9H0H0 1204 aaKnown RBP11.44□□□□□ -0.58
USP54-204ENST00000422491 JMJD4Q9H9V9 463 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 SLCO1B3Q9NPD5 702 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 STOML1Q9UBI4 398 aa11.44□□□□□ -0.58
USP54-204ENST00000422491 CHORDC1Q9UHD1 332 aaPredicted RBP11.44□□□□□ -0.58
USP54-204ENST00000422491 ATF5Q9Y2D1 282 aaPredicted RBP11.44□□□□□ -0.58
USP54-204ENST00000422491 IRS2Q9Y4H2 1338 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 CDK5RAP2Q96SN8 1893 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 PNMA6FA0A0J9YX94 578 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 KDM4FA0A1W2PPD8 638 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 FOXN3O00409 490 aaPredicted RBP11.43□□□□□ -0.58
USP54-204ENST00000422491 MEIS1O00470 390 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 LDHBP07195 334 aaKnown RBP11.43□□□□□ -0.58
USP54-204ENST00000422491 SPATA31C1P0DKV0 1188 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 SNHG28P0DPA3 235 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 VHLP40337 213 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 GPC5P78333 572 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 GRIK5Q16478 980 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 KHDC1Q4VXA5 237 aaKnown RBP11.43□□□□□ -0.58
USP54-204ENST00000422491 PHLDB3Q6NSJ2 640 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 C4orf50Q6ZRC1 276 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 MORC4Q8TE76 937 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 EZH1Q92800 747 aaPredicted RBP11.43□□□□□ -0.58
USP54-204ENST00000422491 SNF8Q96H20 258 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 TRIM4Q9C037 500 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 ABCA3Q99758 1704 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 A0A1B0GVG6 124 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 SMAPO00193 183 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 EDF1O60869 148 aaKnown RBP11.43□□□□□ -0.58
USP54-204ENST00000422491 LRRN2O75325 713 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 GSTA2P09210 222 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 DLATP10515 647 aaKnown RBP11.43□□□□□ -0.58
USP54-204ENST00000422491 MUTP22033 750 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 PTPN4P29074 926 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 ITGA8P53708 1063 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 OCRLQ01968 901 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 ARHGAP44Q17R89 818 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 LRRC8CQ8TDW0 803 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 DENND1AQ8TEH3 1009 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 NRG4Q8WWG1 115 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 MAML1Q92585 1016 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 BICD1Q96G01 975 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 MIPEPQ99797 713 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 IRAK4Q9NWZ3 460 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 ASIC3Q9UHC3 531 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 LNPEPQ9UIQ6 1025 aa11.43□□□□□ -0.58
USP54-204ENST00000422491 RASA4BC9J798 803 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 RASA4O43374 803 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 MARK3P27448 753 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 PTK6Q13882 451 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 NFIL3Q16649 462 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 RFWD3Q6PCD5 774 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 ANKRD35Q8N283 1001 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 C1orf54Q8WWF1 131 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 PWWP2AQ96N64 755 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 MBOAT7Q96N66 472 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 NAP1L4Q99733 375 aaKnown RBP11.42□□□□□ -0.58
USP54-204ENST00000422491 MKNK1Q9BUB5 465 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 PCMTD2Q9NV79 361 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 SCOCQ9UIL1 159 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 GRID1Q9ULK0 1009 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 DNM3Q9UQ16 869 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 MYH14Q7Z406 1995 aaKnown RBP11.42□□□□□ -0.58
USP54-204ENST00000422491 TNRC6CQ9HCJ0 1690 aaKnown RBP11.42□□□□□ -0.58
USP54-204ENST00000422491 RPA1P27694 616 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 POLD1P28340 1107 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 RCN2Q14257 317 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 CTC1Q2NKJ3 1217 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 SNX30Q5VWJ9 437 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 ADGRF4Q8IZF3 695 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 PAIP2Q9BPZ3 127 aaKnown RBP11.42□□□□□ -0.58
USP54-204ENST00000422491 GPCPD1Q9NPB8 672 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 CYLDQ9NQC7 956 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 OLFML3Q9NRN5 406 aa11.42□□□□□ -0.58
USP54-204ENST00000422491 CYP3A7-CYP3A51PA0A087WV96 503 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 FSCN2O14926 492 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 CLDN3O15551 220 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 TRIM49P0CI25 452 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 TRIM49CP0CI26 452 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 CYP3A7P24462 503 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 POLE2P56282 527 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 RPS8P62241 208 aaKnown RBP11.41□□□□□ -0.58
USP54-204ENST00000422491 CUL3Q13618 768 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 TAF1BQ53T94 588 aaPredicted RBP11.41□□□□□ -0.58
USP54-204ENST00000422491 SGO2Q562F6 1265 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 BICDL1Q6ZP65 573 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 PRUNE1Q86TP1 453 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 LRRC47Q8N1G4 583 aaKnown RBP11.41□□□□□ -0.58
USP54-204ENST00000422491 B4GALNT2Q8NHY0 566 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 LMO3Q8TAP4 145 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 PSPC1Q8WXF1 523 aaKnown RBP11.41□□□□□ -0.58
USP54-204ENST00000422491 FGD4Q96M96 766 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 FAM210AQ96ND0 272 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 TIPINQ9BVW5 301 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 RTFDC1Q9BY42 306 aaPredicted RBP11.41□□□□□ -0.58
USP54-204ENST00000422491 PSTPIP2Q9H939 334 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 NUMBLQ9Y6R0 609 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 STRCP1A6NGW2 1772 aa11.41□□□□□ -0.58
USP54-204ENST00000422491 ATMINO43313 823 aaPredicted RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms