RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 PEG10Q86TG7 708 aaKnown RBP14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 CYFIP2Q96F07 1278 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 MAN1C1Q9NR34 630 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 POLIQ9UNA4 740 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 MAGEA10P43363 369 aaPredicted RBP14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 CCT8P50990 548 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 RBBP8Q99708 897 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 LRRC63Q05C16 580 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 BTKQ06187 659 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 NFATC2IPQ8NCF5 419 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 UBASH3BQ8TF42 649 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 TNNQ9UQP3 1299 aa14.03□□□□□ -0.16
CCDC88A-204ENST00000413716 H0YIN7 160 aa14.02□□□□□ -0.16
CCDC88A-204ENST00000413716 ACCSLQ4AC99 568 aa14.02□□□□□ -0.16
CCDC88A-204ENST00000413716 EAPPQ56P03 285 aaPredicted RBP14.02□□□□□ -0.16
CCDC88A-204ENST00000413716 ZBTB33Q86T24 672 aa14.02□□□□□ -0.16
CCDC88A-204ENST00000413716 OSBPL6Q9BZF3 934 aa14.02□□□□□ -0.16
CCDC88A-204ENST00000413716 LINC00854A0A1B0GVQ3 168 aa14.02□□□□□ -0.16
CCDC88A-204ENST00000413716 BRAFP15056 766 aa14.02□□□□□ -0.16
CCDC88A-204ENST00000413716 JAK1P23458 1154 aa14.02□□□□□ -0.16
CCDC88A-204ENST00000413716 NDUFAF6Q330K2 333 aa14.02□□□□□ -0.16
CCDC88A-204ENST00000413716 WDR36Q8NI36 951 aaKnown RBP14.02□□□□□ -0.16
CCDC88A-204ENST00000413716 DDX56Q9NY93 547 aaKnown RBP14.02□□□□□ -0.16
CCDC88A-204ENST00000413716 TUBGCP4Q9UGJ1 667 aa14.02□□□□□ -0.16
CCDC88A-204ENST00000413716 FAM153AQ9UHL3 310 aa14.02□□□□□ -0.16
CCDC88A-204ENST00000413716 FOXP2O15409 715 aa14.02□□□□□ -0.16
CCDC88A-204ENST00000413716 PSTPIP1O43586 416 aa14.02□□□□□ -0.16
CCDC88A-204ENST00000413716 KLHL2O95198 593 aa14.02□□□□□ -0.16
CCDC88A-204ENST00000413716 LGALS3BPQ08380 585 aa14.02□□□□□ -0.16
CCDC88A-204ENST00000413716 MNTQ99583 582 aa14.02□□□□□ -0.16
CCDC88A-204ENST00000413716 FAM25AB3EWG3 89 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 FAM25CB3EWG5 89 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 FAM25GB3EWG6 89 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 TBC1D12O60347 775 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 KRT20P35900 424 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 PLA2G4AP47712 749 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 RPS7P62081 194 aaKnown RBP14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 SPATA21Q7Z572 469 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 CDHR1Q96JP9 859 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 NUP85Q9BW27 656 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 SF3B1O75533 1304 aaKnown RBP eCLIP14.02□□□□□ -0.171e-6■■■■■ 114.6
CCDC88A-204ENST00000413716 EVPLLA8MZ36 301 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 CAND2O75155 1236 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 UBTFL6P0CB48 400 aaPredicted RBP14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 PPIDQ08752 370 aaKnown RBP14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 ATXN7L3BQ96GX2 97 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 PCF11O94913 1555 aaKnown RBP14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 DFFAO00273 331 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 TNPO2O14787 897 aaKnown RBP14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 TRIP10Q15642 601 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 MAML3Q96JK9 1138 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 CARMIL3Q8ND23 1372 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 IL2RBP14784 551 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 DLGAP5Q15398 846 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 C12orf60Q5U649 245 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 IZUMO1Q8IYV9 350 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 SNX31Q8N9S9 440 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 HMG20AQ9NP66 347 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 KLRF2D3W0D1 207 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 GYS1P13807 737 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 PURAQ00577 322 aaKnown RBP14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 ZSWIM7Q19AV6 140 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 ZNF786Q8N393 782 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 ELMO2Q96JJ3 720 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 RAD18Q9NS91 495 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 PYCARDQ9ULZ3 195 aa14.02□□□□□ -0.17
CCDC88A-204ENST00000413716 CCNA1P78396 465 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 RNFT2Q96EX2 444 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 ATAD3AQ9NVI7 634 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 DLGAP2Q9P1A6 1054 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 AQRO60306 1485 aaKnown RBP eCLIP14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 HSMCR30P0CW71 290 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 MYL2P10916 166 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 PDIA2Q13087 525 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 CERKLQ49MI3 558 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 FRMD6Q96NE9 622 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 APOL4Q9BPW4 351 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 TAF1DQ9H5J8 278 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 SMG5Q9UPR3 1016 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 PCP11498 1178 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 CSNK2BP67870 215 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 TRAP1Q12931 704 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 CLMNQ96JQ2 1002 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 TTC7AQ9ULT0 858 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 PITPNM2Q9BZ72 1349 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 TRIM43BA6NCK2 446 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 PDE8AO60658 829 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 GGPS1O95749 300 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 GPR101Q96P66 508 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 THTPAQ9BU02 230 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 CEP44Q9C0F1 390 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 ZMYM4Q5VZL5 1548 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 YWHAZP63104 245 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 NUDT18Q6ZVK8 323 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 FOXP1Q9H334 677 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 TRPM2O94759 1503 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 KPNA4O00629 521 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 NRG3P56975 720 aa14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 PTPN12Q05209 780 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-204ENST00000413716 TFDP2Q14188 446 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms