RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 KIAA1755Q5JYT7 1200 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 STAMQ92783 540 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 EMC3Q9P0I2 261 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 PCDHGB4Q9UN71 923 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 PSMA2P25787 234 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 DGUOKQ16854 277 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 ARMCX2Q7L311 632 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 RRM2BQ7LG56 351 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 RMND5BQ96G75 393 aaPredicted RBP13.58□□□□□ -0.24
COL6A3-206ENST00000409809 CNDP1Q96KN2 507 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 FSD1LQ9BXM9 530 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 CACNA2D2Q9NY47 1150 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 R3HDM2Q9Y2K5 976 aaKnown RBP13.58□□□□□ -0.24
COL6A3-206ENST00000409809 ADGRF5Q8IZF2 1346 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 JAK1P23458 1154 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 ADCY1Q08828 1119 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 ANGPTL8Q6UXH0 198 aa13.58□□□□□ -0.24
COL6A3-206ENST00000409809 KATNA1O75449 491 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 CYP4A11Q02928 519 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 FAM102BQ5T8I3 360 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 CYP4A22Q5TCH4 519 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 PAGE5Q96GU1 130 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 ACEP12821 1306 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 RFC4P35249 363 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 WASHC5Q12768 1159 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 GPS1Q13098 491 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 LPCAT2Q7L5N7 544 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 SCUBE1Q8IWY4 988 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 UBE2OQ9C0C9 1292 aaKnown RBP13.57□□□□□ -0.24
COL6A3-206ENST00000409809 PICK1Q9NRD5 415 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 SAMSN1Q9NSI8 373 aaKnown RBP13.57□□□□□ -0.24
COL6A3-206ENST00000409809 ATXN10Q9UBB4 475 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 KIAA1024Q9UPX6 916 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 ADGRL3Q9HAR2 1447 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 PSTPIP1O43586 416 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 SRP72O76094 671 aaKnown RBP13.57□□□□□ -0.24
COL6A3-206ENST00000409809 FAM160B1Q5W0V3 765 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 JDP2Q8WYK2 163 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 GJA10Q969M2 543 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 IARS2Q9NSE4 1012 aaKnown RBP13.57□□□□□ -0.24
COL6A3-206ENST00000409809 SNPHO15079 494 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 TM9SF1O15321 606 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 TCF3P15923 654 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 RAP1GAPP47736 663 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 SLC12A1Q13621 1099 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 CCDC153Q494R4 210 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 NYAP1Q6ZVC0 841 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 SYN2Q92777 582 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-206ENST00000409809 ATP6V1HQ9UI12 483 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 CARD8Q9Y2G2 431 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 A0A087WXM4 84 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 IMPDH2P12268 514 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 KRT28Q7Z3Y7 464 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 KIAA0825Q8IV33 1275 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 EFHBQ8N7U6 833 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 ZC3H12CQ9C0D7 883 aaKnown RBP13.57□□□□□ -0.24
COL6A3-206ENST00000409809 BFARQ9NZS9 450 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 CPSF3Q9UKF6 684 aaKnown RBP13.57□□□□□ -0.24
COL6A3-206ENST00000409809 BTBD18B2RXH4 712 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 COPB2P35606 906 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 MMRN1Q13201 1228 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 ITGB3BPQ13352 177 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-206ENST00000409809 TMEM63BQ5T3F8 832 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 TRIQKQ629K1 86 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 DHX40Q8IX18 779 aaKnown RBP13.57□□□□□ -0.24
COL6A3-206ENST00000409809 CCDC126Q96EE4 140 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 MED10Q9BTT4 135 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 TRIM54Q9BYV2 358 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 SNX24Q9Y343 169 aa13.57□□□□□ -0.24
COL6A3-206ENST00000409809 TTLL1O95922 423 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 LDHAP00338 332 aaKnown RBP13.56□□□□□ -0.24
COL6A3-206ENST00000409809 IL6P05231 212 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 NFRKBQ6P4R8 1299 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 PRPF39Q86UA1 669 aaKnown RBP13.56□□□□□ -0.24
COL6A3-206ENST00000409809 CCNYQ8ND76 341 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 RASSF5Q8WWW0 418 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 SKA1Q96BD8 255 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.56□□□□□ -0.24
COL6A3-206ENST00000409809 CCDC59Q9P031 241 aaKnown RBP13.56□□□□□ -0.24
COL6A3-206ENST00000409809 ADAMTS1Q9UHI8 967 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 PSMD3O43242 534 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 ATP6V1G2O95670 118 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 PPIDQ08752 370 aaKnown RBP13.56□□□□□ -0.24
COL6A3-206ENST00000409809 OTUD7AQ8TE49 926 aaPredicted RBP13.56□□□□□ -0.24
COL6A3-206ENST00000409809 WDR17Q8IZU2 1322 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 MICAL3Q7RTP6 2002 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 A0A1W2PQJ5 194 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 PREPLQ4J6C6 727 aaPredicted RBP13.56□□□□□ -0.24
COL6A3-206ENST00000409809 LRRC8DQ7L1W4 858 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 DLG3Q92796 817 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 GORASP1Q9BQQ3 440 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 ANAPC7Q9UJX3 599 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 UBTFL6P0CB48 400 aaPredicted RBP13.56□□□□□ -0.24
COL6A3-206ENST00000409809 PRLRP16471 622 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 WDR12Q9GZL7 423 aaKnown RBP13.56□□□□□ -0.24
COL6A3-206ENST00000409809 KRT84Q9NSB2 600 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 IMPAD1Q9NX62 359 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 ZBED4O75132 1171 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 LRRN2O75325 713 aa13.56□□□□□ -0.24
COL6A3-206ENST00000409809 FAM47CQ5HY64 1035 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms