RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 DUSP9Q99956 384 aaKnown RBP17.39■□□□□ 0.38
HMGA1-204ENST00000401473 AMHP03971 560 aa17.39■□□□□ 0.37
HMGA1-204ENST00000401473 SKIP12755 728 aa17.39■□□□□ 0.37
HMGA1-204ENST00000401473 ATP2A2P16615 1042 aaKnown RBP17.39■□□□□ 0.37
HMGA1-204ENST00000401473 GRM5P41594 1212 aa17.39■□□□□ 0.37
HMGA1-204ENST00000401473 KCNJ6P48051 423 aa17.39■□□□□ 0.37
HMGA1-204ENST00000401473 GATMP50440 423 aa17.39■□□□□ 0.37
HMGA1-204ENST00000401473 CYP2J2P51589 502 aa17.39■□□□□ 0.37
HMGA1-204ENST00000401473 C11orf57Q6ZUT1 292 aaPredicted RBP17.39■□□□□ 0.37
HMGA1-204ENST00000401473 SLC9A9Q8IVB4 645 aa17.39■□□□□ 0.37
HMGA1-204ENST00000401473 RDH13Q8NBN7 331 aa17.39■□□□□ 0.37
HMGA1-204ENST00000401473 GSTCDQ8NEC7 633 aa17.39■□□□□ 0.37
HMGA1-204ENST00000401473 ZFP42Q96MM3 310 aa17.39■□□□□ 0.37
HMGA1-204ENST00000401473 FAM213AQ9BRX8 229 aa17.39■□□□□ 0.37
HMGA1-204ENST00000401473 KLK14Q9P0G3 267 aa17.39■□□□□ 0.37
HMGA1-204ENST00000401473 CGNQ9P2M7 1197 aaKnown RBP17.39■□□□□ 0.37
HMGA1-204ENST00000401473 CPSF3Q9UKF6 684 aaKnown RBP17.39■□□□□ 0.37
HMGA1-204ENST00000401473 CTNND2Q9UQB3 1225 aa17.39■□□□□ 0.37
HMGA1-204ENST00000401473 FNDC1Q4ZHG4 1894 aaPredicted RBP17.39■□□□□ 0.37
HMGA1-204ENST00000401473 TRANK1O15050 2925 aa17.38■□□□□ 0.37
HMGA1-204ENST00000401473 NR3C1P04150 777 aa17.38■□□□□ 0.37
HMGA1-204ENST00000401473 ITGA4P13612 1032 aa17.38■□□□□ 0.37
HMGA1-204ENST00000401473 PPP1R2P41236 205 aa17.38■□□□□ 0.37
HMGA1-204ENST00000401473 CASP4P49662 377 aa17.38■□□□□ 0.37
HMGA1-204ENST00000401473 PAK1Q13153 545 aa17.38■□□□□ 0.37
HMGA1-204ENST00000401473 SLC10A6Q3KNW5 377 aa17.38■□□□□ 0.37
HMGA1-204ENST00000401473 CLLU1OSQ5K130 101 aa17.38■□□□□ 0.37
HMGA1-204ENST00000401473 NPAS4Q8IUM7 802 aa17.38■□□□□ 0.37
HMGA1-204ENST00000401473 GOLGA5Q8TBA6 731 aa17.38■□□□□ 0.37
HMGA1-204ENST00000401473 FBXL18Q96ME1 805 aa17.38■□□□□ 0.37
HMGA1-204ENST00000401473 CALUO43852 315 aaPredicted RBP17.37■□□□□ 0.37
HMGA1-204ENST00000401473 OFD1O75665 1012 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 DGKIO75912 1065 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 RECQL4O94761 1208 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 GJB5O95377 273 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 WNT7BP56706 349 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 ADAM9Q13443 819 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 ENOX2Q16206 610 aaKnown RBP17.37■□□□□ 0.37
HMGA1-204ENST00000401473 EDRF1Q3B7T1 1238 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 ALKAL1Q6UXT8 129 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 CBWD2Q8IUF1 395 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 PHOSPHO2Q8TCD6 241 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 ACAP3Q96P50 834 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 DNAJC25Q9H1X3 360 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 MTIF3Q9H2K0 278 aaKnown RBP17.37■□□□□ 0.37
HMGA1-204ENST00000401473 ANO10Q9NW15 660 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 MIOSQ9NXC5 875 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 PARP2Q9UGN5 583 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 ANK1P16157 1881 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 A0A1W2PPC1 479 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 EXTL3O43909 919 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 CLTAP09496 248 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 CXCL8P10145 99 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 NR2F2P24468 414 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 RABGGTBP53611 331 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 LRRC63Q05C16 580 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 STX1AQ16623 288 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 NFIL3Q16649 462 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 HERC6Q8IVU3 1022 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 GPD1LQ8N335 351 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 XXYLT1Q8NBI6 393 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 ZNF689Q96CS4 500 aaPredicted RBP17.37■□□□□ 0.37
HMGA1-204ENST00000401473 PGBD4Q96DM1 585 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 GAD1Q99259 594 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 RWDD2AQ9UIY3 292 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 LRFN2Q9ULH4 789 aa17.37■□□□□ 0.37
HMGA1-204ENST00000401473 COL4A6Q14031 1691 aa17.36■□□□□ 0.37
HMGA1-204ENST00000401473 ARL5CA6NH57 179 aa17.36■□□□□ 0.37
HMGA1-204ENST00000401473 AKAP3O75969 853 aa17.36■□□□□ 0.37
HMGA1-204ENST00000401473 LDHAP00338 332 aaKnown RBP17.36■□□□□ 0.37
HMGA1-204ENST00000401473 MLH1P40692 756 aa17.36■□□□□ 0.37
HMGA1-204ENST00000401473 APBB1IPQ7Z5R6 666 aaPredicted RBP17.36■□□□□ 0.37
HMGA1-204ENST00000401473 HELQQ8TDG4 1101 aa17.36■□□□□ 0.37
HMGA1-204ENST00000401473 NOC3LQ8WTT2 800 aaKnown RBP17.36■□□□□ 0.37
HMGA1-204ENST00000401473 CASD1Q96PB1 797 aa17.36■□□□□ 0.37
HMGA1-204ENST00000401473 SLC9A7Q96T83 725 aa17.36■□□□□ 0.37
HMGA1-204ENST00000401473 CCDC94Q9BW85 323 aaPredicted RBP17.36■□□□□ 0.37
HMGA1-204ENST00000401473 RSAD1Q9HA92 442 aa17.36■□□□□ 0.37
HMGA1-204ENST00000401473 RC3H2Q9HBD1 1191 aaKnown RBP17.36■□□□□ 0.37
HMGA1-204ENST00000401473 PLAGL2Q9UPG8 496 aa17.36■□□□□ 0.37
HMGA1-204ENST00000401473 GIT1Q9Y2X7 761 aa17.36■□□□□ 0.37
HMGA1-204ENST00000401473 TTC26A0AVF1 554 aa17.35■□□□□ 0.37
HMGA1-204ENST00000401473 EXOC3O60645 756 aa17.35■□□□□ 0.37
HMGA1-204ENST00000401473 ADRB2P07550 413 aa17.35■□□□□ 0.37
HMGA1-204ENST00000401473 CCDC192P0DO97 292 aa17.35■□□□□ 0.37
HMGA1-204ENST00000401473 MYOGP15173 224 aa17.35■□□□□ 0.37
HMGA1-204ENST00000401473 ERCC5P28715 1186 aaPredicted RBP17.35■□□□□ 0.37
HMGA1-204ENST00000401473 PBX2P40425 430 aa17.35■□□□□ 0.37
HMGA1-204ENST00000401473 FKBP3Q00688 224 aaKnown RBP17.35■□□□□ 0.37
HMGA1-204ENST00000401473 MYBPC2Q14324 1141 aa17.35■□□□□ 0.37
HMGA1-204ENST00000401473 SNRNP35Q16560 246 aaKnown RBP17.35■□□□□ 0.37
HMGA1-204ENST00000401473 ANO6Q4KMQ2 910 aa17.35■□□□□ 0.37
HMGA1-204ENST00000401473 LRRC55Q6ZSA7 311 aa17.35■□□□□ 0.37
HMGA1-204ENST00000401473 ZC3H3Q8IXZ2 948 aaKnown RBP17.35■□□□□ 0.37
HMGA1-204ENST00000401473 ZMAT2Q96NC0 199 aaKnown RBP17.35■□□□□ 0.37
HMGA1-204ENST00000401473 PTGESO14684 152 aa17.35■□□□□ 0.37
HMGA1-204ENST00000401473 KIAA0391O15091 583 aaKnown RBP17.35■□□□□ 0.37
HMGA1-204ENST00000401473 HTRA4P83105 476 aaPredicted RBP17.35■□□□□ 0.37
HMGA1-204ENST00000401473 SPAG1Q07617 926 aa17.35■□□□□ 0.37
HMGA1-204ENST00000401473 LRIT3Q3SXY7 679 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms