RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 DDX56Q9NY93 547 aaKnown RBP7.6□□□□□ -1.19
UPF2-203ENST00000397053 IP6K2Q9UHH9 426 aa7.6□□□□□ -1.19
UPF2-203ENST00000397053 SPACA6W5XKT8 324 aa7.6□□□□□ -1.19
UPF2-203ENST00000397053 CHUKO15111 745 aa7.6□□□□□ -1.19
UPF2-203ENST00000397053 PLEKHA8P1O95397 391 aa7.6□□□□□ -1.19
UPF2-203ENST00000397053 CETPP11597 493 aa7.6□□□□□ -1.19
UPF2-203ENST00000397053 NCKAP1LP55160 1127 aa7.6□□□□□ -1.19
UPF2-203ENST00000397053 DPCR1Q3MIW9 517 aa7.6□□□□□ -1.19
UPF2-203ENST00000397053 TMED8Q6PL24 325 aaPredicted RBP7.6□□□□□ -1.19
UPF2-203ENST00000397053 THOC1Q96FV9 657 aaKnown RBP7.6□□□□□ -1.19
UPF2-203ENST00000397053 CEP95Q96GE4 821 aa7.6□□□□□ -1.19
UPF2-203ENST00000397053 GPR63Q9BZJ6 419 aa7.6□□□□□ -1.19
UPF2-203ENST00000397053 SMYD3Q9H7B4 428 aa7.6□□□□□ -1.19
UPF2-203ENST00000397053 HPS4Q9NQG7 708 aa7.6□□□□□ -1.19
UPF2-203ENST00000397053 MINPP1Q9UNW1 487 aa7.6□□□□□ -1.19
UPF2-203ENST00000397053 RPAP1Q9BWH6 1393 aaPredicted RBP7.6□□□□□ -1.19
UPF2-203ENST00000397053 HEG1Q9ULI3 1381 aa7.6□□□□□ -1.19
UPF2-203ENST00000397053 C19orf81C9J6K1 198 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 GYG2O15488 501 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 MAN1A2O60476 641 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 CHRNA5P30532 468 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 FCGRTP55899 365 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 SESN2P58004 480 aaPredicted RBP7.59□□□□□ -1.19
UPF2-203ENST00000397053 TRIM72Q6ZMU5 477 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 C11orf96Q7Z7L8 435 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 GTF3C2Q8WUA4 911 aaPredicted RBP7.59□□□□□ -1.19
UPF2-203ENST00000397053 TSEN34Q9BSV6 310 aaKnown RBP7.59□□□□□ -1.19
UPF2-203ENST00000397053 BRD8Q9H0E9 1235 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 SAMSN1Q9NSI8 373 aaKnown RBP7.59□□□□□ -1.19
UPF2-203ENST00000397053 GGA3Q9NZ52 723 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.59□□□□□ -1.19
UPF2-203ENST00000397053 MAN1B1Q9UKM7 699 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 PCDHB7Q9Y5E2 793 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 HMGXB3Q12766 1538 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 LAMC3Q9Y6N6 1575 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 PIK3R2O00459 728 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 MAFGO15525 162 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 LZTS3O60299 673 aaPredicted RBP7.59□□□□□ -1.19
UPF2-203ENST00000397053 NDUFA10O95299 355 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 RFX3P48380 749 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 TRPC1P48995 793 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 C2orf54Q08AI8 447 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 TP53BP2Q13625 1128 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 E2F5Q15329 346 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 ADCK5Q3MIX3 580 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 FAM47EQ6ZV65 393 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 ENOSF1Q7L5Y1 443 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 ZC3H18Q86VM9 953 aaKnown RBP7.59□□□□□ -1.19
UPF2-203ENST00000397053 RFWD2Q8NHY2 731 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 ZNF507Q8TCN5 953 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 MRPS31Q92665 395 aaKnown RBP7.59□□□□□ -1.19
UPF2-203ENST00000397053 AGAP3Q96P47 875 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 PNKPQ96T60 521 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 SH3GLB2Q9NR46 395 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 POTEB3A0JP26 581 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 POTECB2RU33 542 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 CAND2O75155 1236 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 CKMP06732 381 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 RPSAP08865 295 aaKnown RBP7.59□□□□□ -1.19
UPF2-203ENST00000397053 KITP10721 976 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 ABCE1P61221 599 aaKnown RBP7.59□□□□□ -1.19
UPF2-203ENST00000397053 LAMB3Q13751 1172 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 TRIM60Q495X7 471 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 XKR3Q5GH77 459 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 POTEBQ6S5H4 581 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 GPD1LQ8N335 351 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 ATPAF2Q8N5M1 289 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 C10orf53Q8N6V4 93 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 LINC00301Q8NCQ3 95 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 BHMTQ93088 406 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 ABTB1Q969K4 478 aaPredicted RBP7.59□□□□□ -1.19
UPF2-203ENST00000397053 ATXN7L3BQ96GX2 97 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 NDEL1Q9GZM8 345 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 MFSD1Q9H3U5 465 aa7.59□□□□□ -1.19
UPF2-203ENST00000397053 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.59□□□□□ -1.19
UPF2-203ENST00000397053 COPG1Q9Y678 874 aaKnown RBP7.59□□□□□ -1.19
UPF2-203ENST00000397053 DCTN3O75935 186 aa7.59□□□□□ -1.2
UPF2-203ENST00000397053 TMEM62Q0P6H9 643 aa7.59□□□□□ -1.2
UPF2-203ENST00000397053 CDH18Q13634 790 aa7.59□□□□□ -1.2
UPF2-203ENST00000397053 STILQ15468 1287 aa7.59□□□□□ -1.2
UPF2-203ENST00000397053 ANGEL2Q5VTE6 544 aaKnown RBP7.59□□□□□ -1.2
UPF2-203ENST00000397053 HIBCHQ6NVY1 386 aaPredicted RBP7.59□□□□□ -1.2
UPF2-203ENST00000397053 ZNF589Q86UQ0 364 aaPredicted RBP7.59□□□□□ -1.2
UPF2-203ENST00000397053 RASSF3Q86WH2 238 aa7.59□□□□□ -1.2
UPF2-203ENST00000397053 GPRC5AQ8NFJ5 357 aa7.59□□□□□ -1.2
UPF2-203ENST00000397053 YME1L1Q96TA2 773 aa7.59□□□□□ -1.2
UPF2-203ENST00000397053 NAGPAQ9UK23 515 aa7.59□□□□□ -1.2
UPF2-203ENST00000397053 KIF24Q5T7B8 1368 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 CTIFO43310 598 aaKnown RBP7.58□□□□□ -1.2
UPF2-203ENST00000397053 ORC4O43929 436 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 PDGFRBP09619 1106 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 ALOX15P16050 662 aaPredicted RBP7.58□□□□□ -1.2
UPF2-203ENST00000397053 RGS2P41220 211 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 UBE3AQ05086 875 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 GPS1Q13098 491 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 NNTQ13423 1086 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 BAATQ14032 418 aaPredicted RBP7.58□□□□□ -1.2
UPF2-203ENST00000397053 ZNF746Q6NUN9 644 aaPredicted RBP7.58□□□□□ -1.2
UPF2-203ENST00000397053 RHOT1Q8IXI2 618 aa7.58□□□□□ -1.2
UPF2-203ENST00000397053 SHCBP1Q8NEM2 672 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms