RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 SPTBN4Q9H254 2564 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 DNAH14Q0VDD8 3507 aa11.44□□□□□ -0.58
NEDD8-202ENST00000396828 DOCK6Q96HP0 2047 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 GALR2O43603 387 aaPredicted RBP11.43□□□□□ -0.58
NEDD8-202ENST00000396828 PI15O43692 258 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 GAS2O43903 313 aaKnown RBP11.43□□□□□ -0.58
NEDD8-202ENST00000396828 NPTXRO95502 500 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 YEATS4O95619 227 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 BMP15O95972 392 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 EDN1P05305 212 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 NPR3P17342 541 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 RPL17P18621 184 aaKnown RBP11.43□□□□□ -0.58
NEDD8-202ENST00000396828 ATP2B1P20020 1258 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 IGFBP6P24592 240 aaPredicted RBP11.43□□□□□ -0.58
NEDD8-202ENST00000396828 MXD4Q14582 209 aaPredicted RBP11.43□□□□□ -0.58
NEDD8-202ENST00000396828 STK38Q15208 465 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 SF3A1Q15459 793 aaKnown RBP11.43□□□□□ -0.58
NEDD8-202ENST00000396828 CALCRLQ16602 461 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 TTC38Q5R3I4 469 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 CWF19L1Q69YN2 538 aaKnown RBP11.43□□□□□ -0.58
NEDD8-202ENST00000396828 PPFIBP1Q86W92 1011 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 KCNG4Q8TDN1 519 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 CHAMP1Q96JM3 812 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 USP28Q96RU2 1077 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 NAP1L4Q99733 375 aaKnown RBP11.43□□□□□ -0.58
NEDD8-202ENST00000396828 PRRX2Q99811 253 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 KCNK12Q9HB15 430 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 POLD4Q9HCU8 107 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 CHST7Q9NS84 486 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 ANKEF1Q9NU02 776 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 ZNF292O60281 2723 aa11.43□□□□□ -0.58
NEDD8-202ENST00000396828 CCDC195A0A1B0GUA6 201 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 A0A1B0GUA9 196 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 GOLGA6L4A6NEF3 574 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 SPDYE4A6NLX3 237 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 NEMFO60524 1076 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 USO1O60763 962 aaKnown RBP11.42□□□□□ -0.58
NEDD8-202ENST00000396828 PRPF40AO75400 957 aaKnown RBP11.42□□□□□ -0.58
NEDD8-202ENST00000396828 MED24O75448 989 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 DGAT1O75907 488 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 URODP06132 367 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 NASPP49321 788 aaPredicted RBP11.42□□□□□ -0.58
NEDD8-202ENST00000396828 GLUD2P49448 558 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 TOB1P50616 345 aaPredicted RBP11.42□□□□□ -0.58
NEDD8-202ENST00000396828 DSG1Q02413 1049 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 POU5F1BQ06416 359 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 ASTLQ6HA08 431 aaPredicted RBP11.42□□□□□ -0.58
NEDD8-202ENST00000396828 CCDC149Q6ZUS6 474 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 CATSPER3Q86XQ3 398 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 PALB2Q86YC2 1186 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 GLYCTKQ8IVS8 523 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 PLCD3Q8N3E9 789 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 CNNM3Q8NE01 707 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 LEO1Q8WVC0 666 aaPredicted RBP11.42□□□□□ -0.58
NEDD8-202ENST00000396828 BSNDQ8WZ55 320 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 ZNF707Q96C28 371 aaPredicted RBP11.42□□□□□ -0.58
NEDD8-202ENST00000396828 MYADMQ96S97 322 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 POLR3FQ9H1D9 316 aaPredicted RBP11.42□□□□□ -0.58
NEDD8-202ENST00000396828 RXFP1Q9HBX9 757 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 UBN1Q9NPG3 1134 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 RCOR1Q9UKL0 485 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 CLIC4Q9Y696 253 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 DOCK8Q8NF50 2099 aa11.42□□□□□ -0.58
NEDD8-202ENST00000396828 MTCL1Q9Y4B5 1905 aaKnown RBP11.41□□□□□ -0.58
NEDD8-202ENST00000396828 CARNS1A5YM72 827 aa11.41□□□□□ -0.58
NEDD8-202ENST00000396828 SPTLC2O15270 562 aa11.41□□□□□ -0.58
NEDD8-202ENST00000396828 TGM5O43548 720 aa11.41□□□□□ -0.58
NEDD8-202ENST00000396828 GFRA3O60609 400 aa11.41□□□□□ -0.58
NEDD8-202ENST00000396828 AXLP30530 894 aa11.41□□□□□ -0.58
NEDD8-202ENST00000396828 ORC2Q13416 577 aaPredicted RBP11.41□□□□□ -0.58
NEDD8-202ENST00000396828 TDGQ13569 410 aa11.41□□□□□ -0.58
NEDD8-202ENST00000396828 TFDP1Q14186 410 aa11.41□□□□□ -0.58
NEDD8-202ENST00000396828 SLC39A14Q15043 492 aa11.41□□□□□ -0.58
NEDD8-202ENST00000396828 C15orf39Q6ZRI6 1047 aa11.41□□□□□ -0.58
NEDD8-202ENST00000396828 OTOP3Q7RTS5 596 aa11.41□□□□□ -0.58
NEDD8-202ENST00000396828 ASCL5Q7RTU5 278 aa11.41□□□□□ -0.58
NEDD8-202ENST00000396828 CCDC51Q96ER9 411 aa11.41□□□□□ -0.58
NEDD8-202ENST00000396828 NFKBIZQ9BYH8 718 aa11.41□□□□□ -0.58
NEDD8-202ENST00000396828 GDPD2Q9HCC8 539 aa11.41□□□□□ -0.58
NEDD8-202ENST00000396828 GIT1Q9Y2X7 761 aa11.41□□□□□ -0.58
NEDD8-202ENST00000396828 RIF1Q5UIP0 2472 aaKnown RBP11.41□□□□□ -0.58
NEDD8-202ENST00000396828 LRRIQ4A6NIV6 560 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 LAD1O00515 517 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 PTGESO14684 152 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 PPP6R2O75170 966 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 GLUD1P00367 558 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 ADH1AP07327 375 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 MCM7P33993 719 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 ME1P48163 572 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 NBR1Q14596 966 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 PCBP1Q15365 356 aaKnown RBP eCLIP11.4□□□□□ -0.58
NEDD8-202ENST00000396828 ZNF174Q15697 407 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 ECM1Q16610 540 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 RTP2Q5QGT7 225 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 FUT10Q6P4F1 479 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 SLC27A1Q6PCB7 646 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 LILRA6Q6PI73 481 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 PRSS55Q6UWB4 352 aaPredicted RBP11.4□□□□□ -0.58
NEDD8-202ENST00000396828 LINC00301Q8NCQ3 95 aa11.4□□□□□ -0.58
NEDD8-202ENST00000396828 FLCNQ8NFG4 579 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms