RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ITPRIPL1Q6GPH6 555 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 TUBGCP3Q96CW5 907 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 C2orf40Q9H1Z8 148 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 FEM1BQ9UK73 627 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 SHROOM2Q13796 1616 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 PGM1P36871 562 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 GPC3P51654 580 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 HIF1AQ16665 826 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 RABGAP1LQ5R372 815 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 FRA10AC1Q70Z53 315 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 FBXO40Q9UH90 709 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 MINPP1Q9UNW1 487 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 PITPNM2Q9BZ72 1349 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 TDP2O95551 362 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 TYK2P29597 1187 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 AP3M2P53677 418 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 NR1I3Q14994 352 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 SLC27A3Q5K4L6 730 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 STOX1Q6ZVD7 989 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 GPR101Q96P66 508 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 PPCSQ9HAB8 311 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 PARVAQ9NVD7 372 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 USP15Q9Y4E8 981 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 CPDO75976 1380 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 TRIM49P0CI25 452 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 TRIM49CP0CI26 452 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 GRK2P25098 689 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 MARK3P27448 753 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 HIC1Q14526 733 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 STXBP2Q15833 593 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 Q3C1V9 767 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 KIAA1841Q6NSI8 718 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 SGSM3Q96HU1 749 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 CYP4F11Q9HBI6 524 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 UVRAGQ9P2Y5 699 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 LRFN2Q9ULH4 789 aa10.84□□□□□ -0.67
LIMCH1-203ENST00000396595 EYA4O95677 639 aa10.83□□□□□ -0.67
LIMCH1-203ENST00000396595 FGFR4P22455 802 aa10.83□□□□□ -0.67
LIMCH1-203ENST00000396595 STAT3P40763 770 aa10.83□□□□□ -0.67
LIMCH1-203ENST00000396595 ARSEP51690 589 aa10.83□□□□□ -0.67
LIMCH1-203ENST00000396595 QRICH1Q2TAL8 776 aa10.83□□□□□ -0.67
LIMCH1-203ENST00000396595 MIGA2Q7L4E1 593 aa10.83□□□□□ -0.67
LIMCH1-203ENST00000396595 SLC44A5Q8NCS7 719 aa10.83□□□□□ -0.67
LIMCH1-203ENST00000396595 NEDD1Q8NHV4 660 aa10.83□□□□□ -0.67
LIMCH1-203ENST00000396595 SLC13A1Q9BZW2 595 aa10.83□□□□□ -0.67
LIMCH1-203ENST00000396595 HPCAL4Q9UM19 191 aa10.83□□□□□ -0.67
LIMCH1-203ENST00000396595 REREQ9P2R6 1566 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 MROH7-TTC4A0A0A0MT08 1334 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 M0QYV0 167 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 PHF2O75151 1096 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 SNUPNO95149 360 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 FMR1Q06787 632 aaKnown RBP eCLIP10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 ADCK1Q86TW2 530 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 SH2D3CQ8N5H7 860 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 ALKBH8Q96BT7 664 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 ZNF185O15231 689 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 RAD17O75943 681 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 PSMC5P62195 406 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 DPYDQ12882 1025 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 KRT27Q7Z3Y8 459 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 APLFQ8IW19 511 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 MTRQ99707 1265 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 FOXP3Q9BZS1 431 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 GID8Q9NWU2 228 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 CAB39Q9Y376 341 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 HUS1O60921 280 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 TSPAN9O75954 239 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 RHOBTB3O94955 611 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 ITIH2P19823 946 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 SERPINB1P30740 379 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 CRKP46108 304 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 FXR1P51114 621 aaKnown RBP eCLIP10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 ZNF710Q8N1W2 664 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 TC2NQ8N9U0 490 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 NSUN6Q8TEA1 469 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 MTBPQ96DY7 904 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 XPO6Q96QU8 1125 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 STX18Q9P2W9 335 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 ARHGAP26Q9UNA1 814 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 TRAF3IP3Q9Y228 551 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 PIK3R2O00459 728 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 PSMD14O00487 310 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 CYP27B1O15528 508 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 PDE5AO76074 875 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 HLA-DPA1P20036 260 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 DNAL1Q4LDG9 190 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 GPD1LQ8N335 351 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 BEST2Q8NFU1 509 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 ZBTB10Q96DT7 871 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 PPP1R16BQ96T49 567 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 LXNQ9BS40 222 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 ISCA1Q9BUE6 129 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 RANBP17Q9H2T7 1088 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 OLA1Q9NTK5 396 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 SLC8A2Q9UPR5 921 aa10.83□□□□□ -0.68
LIMCH1-203ENST00000396595 CHN1P15882 459 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 POU5F1BQ06416 359 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 EPHA7Q15375 998 aa10.82□□□□□ -0.68
LIMCH1-203ENST00000396595 HABP4Q5JVS0 413 aaKnown RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms