RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 NSMCE4AQ9NXX6 385 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 CDC27P30260 824 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 HSPA13P48723 471 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 ABCE1P61221 599 aaKnown RBP12.49□□□□□ -0.41
SYNPO-202ENST00000394243 GRIN1Q05586 938 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 RNF139Q8WU17 664 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 OPTNQ96CV9 577 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 CNDP1Q96KN2 507 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 INTS2Q9H0H0 1204 aaKnown RBP12.49□□□□□ -0.41
SYNPO-202ENST00000394243 MANSC1Q9H8J5 431 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 RPF1Q9H9Y2 349 aaKnown RBP12.49□□□□□ -0.41
SYNPO-202ENST00000394243 DDX56Q9NY93 547 aaKnown RBP12.49□□□□□ -0.41
SYNPO-202ENST00000394243 LCMT1Q9UIC8 334 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 TCP10L2B9ZVM9 353 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 NYAP1Q6ZVC0 841 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 ARHGEF1Q92888 912 aaKnown RBP12.49□□□□□ -0.41
SYNPO-202ENST00000394243 AGBL1Q96MI9 1066 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 HSPBP1Q9NZL4 362 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 RASSF9O75901 435 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 PCCAP05165 728 aaPredicted RBP12.49□□□□□ -0.41
SYNPO-202ENST00000394243 ITIH2P19823 946 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 SSTR3P32745 418 aaPredicted RBP12.49□□□□□ -0.41
SYNPO-202ENST00000394243 FXR1P51114 621 aaKnown RBP eCLIP12.49□□□□□ -0.41
SYNPO-202ENST00000394243 WASHC5Q12768 1159 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 KNOP1Q1ED39 458 aaKnown RBP12.49□□□□□ -0.41
SYNPO-202ENST00000394243 RRM2BQ7LG56 351 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 MRPS26Q9BYN8 205 aaKnown RBP12.49□□□□□ -0.41
SYNPO-202ENST00000394243 MKL2Q9ULH7 1088 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 UHRF1BP1LA0JNW5 1464 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 ABCA10Q8WWZ4 1543 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 FOXP2O15409 715 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 SRP72O76094 671 aaKnown RBP12.49□□□□□ -0.41
SYNPO-202ENST00000394243 CLPTM1O96005 669 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 HSD17B3P37058 310 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 SURF1Q15526 300 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 PACS2Q86VP3 889 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 CELF4Q9BZC1 486 aaKnown RBP12.49□□□□□ -0.41
SYNPO-202ENST00000394243 KDM4CQ9H3R0 1056 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 PCMTD2Q9NV79 361 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 FAM153AQ9UHL3 310 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 ARIH1Q9Y4X5 557 aaPredicted RBP12.49□□□□□ -0.41
SYNPO-202ENST00000394243 ATP9AO75110 1047 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 ZNF189O75820 626 aaPredicted RBP12.49□□□□□ -0.41
SYNPO-202ENST00000394243 EAPPQ56P03 285 aaPredicted RBP12.49□□□□□ -0.41
SYNPO-202ENST00000394243 BARGINQ6ZT62 677 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 LARGE2Q8N3Y3 721 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 TC2NQ8N9U0 490 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 SLC35G2Q8TBE7 412 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 ROPN1BQ9BZX4 212 aaPredicted RBP12.49□□□□□ -0.41
SYNPO-202ENST00000394243 ROPN1Q9HAT0 212 aaPredicted RBP12.49□□□□□ -0.41
SYNPO-202ENST00000394243 NEU2Q9Y3R4 380 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 V9GYQ6 96 aa12.49□□□□□ -0.41
SYNPO-202ENST00000394243 K7ERI5 159 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 RGS5O15539 181 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 ALBP02768 609 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 ATP1A4Q13733 1029 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 RASGRF1Q13972 1273 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 SLC29A2Q14542 456 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 IYDQ6PHW0 289 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 METTL16Q86W50 562 aaKnown RBP12.48□□□□□ -0.41
SYNPO-202ENST00000394243 IFT43Q96FT9 208 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 ISCUQ9H1K1 167 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 PSMC3P17980 439 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 CACNA2D1P54289 1103 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 BCAR1P56945 870 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 FMR1Q06787 632 aaKnown RBP eCLIP12.48□□□□□ -0.41
SYNPO-202ENST00000394243 NR1I3Q14994 352 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 PROSER3Q2NL68 480 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 VPS50Q96JG6 964 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 AGPAT5Q9NUQ2 364 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 KLHL11Q9NVR0 708 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 MAD2L2Q9UI95 211 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 USP17L3A6NCW0 530 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 USP17L4A6NCW7 530 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 E5RI56 91 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 CAPN1P07384 714 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 VAMP7P51809 220 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 USP17L1Q7RTZ2 530 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 PODNQ7Z5L7 613 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 XXYLT1Q8NBI6 393 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 SH3GLB2Q9NR46 395 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 BFARQ9NZS9 450 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 CDHR2Q9BYE9 1310 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 PVALEFA0A1B0GWK0 134 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 NLRP11P59045 1033 aaKnown RBP12.48□□□□□ -0.41
SYNPO-202ENST00000394243 ANKRD40Q6AI12 368 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 PHF21AQ96BD5 680 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 KLF6Q99612 283 aaPredicted RBP12.48□□□□□ -0.41
SYNPO-202ENST00000394243 EGFL8Q99944 293 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 PSMD14O00487 310 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 CLDN3O15551 220 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 OCM2P0CE71 109 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 OCMP0CE72 109 aaPredicted RBP12.48□□□□□ -0.41
SYNPO-202ENST00000394243 H2AFXP16104 143 aaPredicted RBP12.48□□□□□ -0.41
SYNPO-202ENST00000394243 GNA15P30679 374 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 NUP107P57740 925 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 EIF3EP60228 445 aaKnown RBP12.48□□□□□ -0.41
SYNPO-202ENST00000394243 MXD4Q14582 209 aaPredicted RBP12.48□□□□□ -0.41
SYNPO-202ENST00000394243 SLC18A3Q16572 532 aa12.48□□□□□ -0.41
SYNPO-202ENST00000394243 ARMCX2Q7L311 632 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms