RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 TMEM150BA6NC51 233 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 SORBS3O60504 671 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 RTN2O75298 545 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 MAGEA10P43363 369 aaPredicted RBP10.36□□□□□ -0.75
COL6A3-204ENST00000392003 NCKAP1LP55160 1127 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 ZRSR2Q15696 482 aaKnown RBP10.36□□□□□ -0.75
COL6A3-204ENST00000392003 CEP85LQ5SZL2 805 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 NAA35Q5VZE5 725 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 KRT39Q6A163 491 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 IQCKQ8N0W5 287 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 SLC20A1Q8WUM9 679 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 GPRASP2Q96D09 838 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 ARHGEF26Q96DR7 871 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 IFT74Q96LB3 600 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 RNPC3Q96LT9 517 aaKnown RBP10.36□□□□□ -0.75
COL6A3-204ENST00000392003 GPR88Q9GZN0 384 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.36□□□□□ -0.757e-8■■■■■ 186.3
COL6A3-204ENST00000392003 HOXC10Q9NYD6 342 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 TBX20Q9UMR3 447 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 ATP9AO75110 1047 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 NR3C2P08235 984 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 HSPA9P38646 679 aaKnown RBP10.36□□□□□ -0.75
COL6A3-204ENST00000392003 PPATQ06203 517 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 SNRNP35Q16560 246 aaKnown RBP10.36□□□□□ -0.75
COL6A3-204ENST00000392003 UGCGQ16739 394 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 KCTD16Q68DU8 428 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 GADL1Q6ZQY3 521 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 LMO3Q8TAP4 145 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 UBLCP1Q8WVY7 318 aaPredicted RBP10.36□□□□□ -0.75
COL6A3-204ENST00000392003 POMGNT1Q8WZA1 660 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 TAS2R14Q9NYV8 317 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 GABBR1Q9UBS5 961 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 PLAAQ9Y263 795 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 RGPD3A6NKT7 1758 aaPredicted RBP10.36□□□□□ -0.75
COL6A3-204ENST00000392003 RGPD4Q7Z3J3 1758 aa10.36□□□□□ -0.75
COL6A3-204ENST00000392003 KRT14P02533 472 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 PSAPP07602 524 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 HSPA6P17066 643 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 NPTX2P47972 431 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 IRAK1P51617 712 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 SEL1L2Q5TEA6 688 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 RUFY4Q6ZNE9 571 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 ANKRD35Q8N283 1001 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 ARFGAP2Q8N6H7 521 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 NSUN6Q8TEA1 469 aaKnown RBP10.35□□□□□ -0.75
COL6A3-204ENST00000392003 SAAL1Q96ER3 474 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 CDHR1Q96JP9 859 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 SYT11Q9BT88 431 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 TMEM117Q9H0C3 514 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 TTC7AQ9ULT0 858 aaPredicted RBP10.35□□□□□ -0.75
COL6A3-204ENST00000392003 H0YCG3 227 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 MYZAPP0CAP1 466 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 ITGA4P13612 1032 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 CNGA1P29973 690 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 LIG3P49916 1009 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 PDE6CP51160 858 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 MESDQ14696 234 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 HHATQ5VTY9 493 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 DPY19L2Q6NUT2 758 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 LRIG3Q6UXM1 1119 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 TADA2BQ86TJ2 420 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 CBWD2Q8IUF1 395 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 CD302Q8IX05 232 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 MCPH1Q8NEM0 835 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 TMEM174Q8WUU8 243 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 SH3GL3Q99963 347 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 TEX13BQ9BXU2 312 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 DPH5Q9H2P9 285 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 C17orf75Q9HAS0 396 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 ALG6Q9Y672 507 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 SYNGAP1Q96PV0 1343 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 IGSF9BQ9UPX0 1349 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 HMGB1P1B2RPK0 211 aaPredicted RBP10.35□□□□□ -0.75
COL6A3-204ENST00000392003 PMM2O15305 246 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 TTI1O43156 1089 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 DAPK3O43293 454 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 CCNE2O96020 404 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 CTNNA1P35221 906 aaKnown RBP10.35□□□□□ -0.75
COL6A3-204ENST00000392003 TTMPQ5BVD1 217 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 DDX42Q86XP3 938 aaKnown RBP eCLIP10.35□□□□□ -0.75
COL6A3-204ENST00000392003 MAP4K3Q8IVH8 894 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 MORC4Q8TE76 937 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 ARPC5LQ9BPX5 153 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 PAGR1Q9BTK6 254 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 TRIM31Q9BZY9 425 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 FHDC1Q9C0D6 1143 aaPredicted RBP10.35□□□□□ -0.75
COL6A3-204ENST00000392003 FAM107BQ9H098 131 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 TMEM8AQ9HCN3 771 aa10.35□□□□□ -0.75
COL6A3-204ENST00000392003 HNRNPDLO14979 420 aaKnown RBP10.34□□□□□ -0.75
COL6A3-204ENST00000392003 CYP26A1O43174 497 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 SPOPO43791 374 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 SHOX2O60902 331 aaPredicted RBP10.34□□□□□ -0.75
COL6A3-204ENST00000392003 SGPL1O95470 568 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 GZMAP12544 262 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 RWDD2BP57060 319 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 DR1Q01658 176 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 TMEM62Q0P6H9 643 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 ZNF211Q13398 564 aaPredicted RBP10.34□□□□□ -0.75
COL6A3-204ENST00000392003 TRADDQ15628 312 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 GNPTABQ3T906 1256 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms