RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 KLHDC9Q8NEP7 349 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 ZBTB45Q96K62 511 aaPredicted RBP13.48□□□□□ -0.25
CIITA-202ENST00000381835 MKNK1Q9BUB5 465 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 CCDC113Q9H0I3 377 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 MINDY3Q9H8M7 445 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 IFT122Q9HBG6 1241 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 ANKFY1Q9P2R3 1169 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 FEZ2Q9UHY8 353 aaPredicted RBP13.48□□□□□ -0.25
CIITA-202ENST00000381835 GINS2Q9Y248 185 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 MBLAC1A4D2B0 266 aaPredicted RBP13.48□□□□□ -0.25
CIITA-202ENST00000381835 TTLL13PA6NNM8 815 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 MSCO60682 206 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 ACTN2P35609 894 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 PHKA2P46019 1235 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 NKX3-2P78367 333 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 ADAM17P78536 824 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 KCNH2Q12809 1159 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 FAM47CQ5HY64 1035 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 RUFY4Q6ZNE9 571 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 RNF180Q86T96 592 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 KCNN1Q92952 543 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 PCMTD1Q96MG8 357 aaPredicted RBP13.48□□□□□ -0.25
CIITA-202ENST00000381835 MYO6Q9UM54 1294 aa13.48□□□□□ -0.25
CIITA-202ENST00000381835 RNF225M0QZC1 329 aaPredicted RBP13.47□□□□□ -0.25
CIITA-202ENST00000381835 N4BP1O75113 896 aaKnown RBP13.47□□□□□ -0.25
CIITA-202ENST00000381835 TUBBP07437 444 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 KRT9P35527 623 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 ARHGAP25P42331 645 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 KLK7P49862 253 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 CASP8Q14790 479 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 KIZQ2M2Z5 673 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 HSP90B2PQ58FF3 399 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 CCSAPQ6IQ19 270 aaPredicted RBP13.47□□□□□ -0.25
CIITA-202ENST00000381835 DNAJB3Q8WWF6 145 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 VTI1AQ96AJ9 217 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 BORCS6Q96GS4 357 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 SMIM35A0A1B0GVV1 85 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 PIGRP01833 764 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 IQCF3P0C7M6 154 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 GNAT1P11488 350 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 GARTP22102 1010 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 CST5P28325 142 aaPredicted RBP13.47□□□□□ -0.25
CIITA-202ENST00000381835 GPC3P51654 580 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 MBTD1Q05BQ5 628 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 TMEM132AQ24JP5 1023 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 CBWD2Q8IUF1 395 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 PCSK9Q8NBP7 692 aaKnown RBP13.47□□□□□ -0.25
CIITA-202ENST00000381835 TMEM174Q8WUU8 243 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 SLC35C1Q96A29 364 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 TCHPQ9BT92 498 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 MRPL4Q9BYD3 311 aaKnown RBP13.47□□□□□ -0.25
CIITA-202ENST00000381835 MMRN2Q9H8L6 949 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 FAN1Q9Y2M0 1017 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 PTPN22Q9Y2R2 807 aa13.47□□□□□ -0.25
CIITA-202ENST00000381835 A0A1W2PQC6 194 aa13.46□□□□□ -0.25
CIITA-202ENST00000381835 B4GALT5O43286 388 aa13.46□□□□□ -0.25
CIITA-202ENST00000381835 TRIM49P0CI25 452 aa13.46□□□□□ -0.25
CIITA-202ENST00000381835 TRIM49CP0CI26 452 aa13.46□□□□□ -0.25
CIITA-202ENST00000381835 HARSP12081 509 aaKnown RBP13.46□□□□□ -0.25
CIITA-202ENST00000381835 KRT13P13646 458 aa13.46□□□□□ -0.25
CIITA-202ENST00000381835 BFSP1Q12934 665 aa13.46□□□□□ -0.25
CIITA-202ENST00000381835 SNRNP35Q16560 246 aaKnown RBP13.46□□□□□ -0.25
CIITA-202ENST00000381835 DNAJC5GQ8N7S2 189 aa13.46□□□□□ -0.25
CIITA-202ENST00000381835 ERGIC2Q96RQ1 377 aa13.46□□□□□ -0.25
CIITA-202ENST00000381835 FAM213AQ9BRX8 229 aa13.46□□□□□ -0.25
CIITA-202ENST00000381835 CRACR2AQ9BSW2 395 aa13.46□□□□□ -0.25
CIITA-202ENST00000381835 NFKBIZQ9BYH8 718 aa13.46□□□□□ -0.25
CIITA-202ENST00000381835 HAPLN2Q9GZV7 340 aa13.46□□□□□ -0.25
CIITA-202ENST00000381835 ACBD3Q9H3P7 528 aa13.46□□□□□ -0.25
CIITA-202ENST00000381835 FZD8Q9H461 694 aa13.46□□□□□ -0.25
CIITA-202ENST00000381835 GTF2IRD1Q9UHL9 959 aa13.46□□□□□ -0.25
CIITA-202ENST00000381835 AGO2Q9UKV8 859 aaKnown RBP13.46□□□□□ -0.25
CIITA-202ENST00000381835 GUCA1BQ9UMX6 200 aa13.46□□□□□ -0.25
CIITA-202ENST00000381835 CLDN3O15551 220 aa13.46□□□□□ -0.26
CIITA-202ENST00000381835 AFPP02771 609 aaKnown RBP13.46□□□□□ -0.26
CIITA-202ENST00000381835 ADRB2P07550 413 aa13.46□□□□□ -0.26
CIITA-202ENST00000381835 POU5F1BQ06416 359 aa13.46□□□□□ -0.26
CIITA-202ENST00000381835 PRPF4BQ13523 1007 aaKnown RBP13.46□□□□□ -0.26
CIITA-202ENST00000381835 LHX8Q68G74 356 aa13.46□□□□□ -0.26
CIITA-202ENST00000381835 SLFN12LQ6IEE8 588 aa13.46□□□□□ -0.26
CIITA-202ENST00000381835 INTS8Q75QN2 995 aaKnown RBP13.46□□□□□ -0.26
CIITA-202ENST00000381835 ZBTB33Q86T24 672 aa13.46□□□□□ -0.26
CIITA-202ENST00000381835 CDR2LQ86X02 465 aaPredicted RBP13.46□□□□□ -0.26
CIITA-202ENST00000381835 GPD1LQ8N335 351 aa13.46□□□□□ -0.26
CIITA-202ENST00000381835 NOA1Q8NC60 698 aaKnown RBP13.46□□□□□ -0.26
CIITA-202ENST00000381835 CHP1Q99653 195 aa13.46□□□□□ -0.26
CIITA-202ENST00000381835 ACO2Q99798 780 aaKnown RBP13.46□□□□□ -0.26
CIITA-202ENST00000381835 EPN1Q9Y6I3 576 aaPredicted RBP13.46□□□□□ -0.26
CIITA-202ENST00000381835 ACKR2O00590 384 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 TRIM21P19474 475 aaKnown RBP13.45□□□□□ -0.26
CIITA-202ENST00000381835 HOXC8P31273 242 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 DLG4P78352 724 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 AMPD2Q01433 879 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 GDF6Q6KF10 455 aaPredicted RBP13.45□□□□□ -0.26
CIITA-202ENST00000381835 ZPBP2Q6X784 338 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 MSTO1Q9BUK6 570 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 PRMT7Q9NVM4 692 aaPredicted RBP13.45□□□□□ -0.26
CIITA-202ENST00000381835 STYXL1Q9Y6J8 313 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 FRMPD3Q5JV73 1810 aa13.45□□□□□ -0.26
CIITA-202ENST00000381835 TOM1L1O75674 476 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms