RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 NKX1-2Q9UD57 310 aaPredicted RBP19.78■□□□□ 0.76
CCDC3-201ENST00000378825 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.78■□□□□ 0.76
CCDC3-201ENST00000378825 GDF11O95390 407 aa19.78■□□□□ 0.76
CCDC3-201ENST00000378825 HSPA1LP34931 641 aa19.78■□□□□ 0.76
CCDC3-201ENST00000378825 AP3B2Q13367 1082 aa19.78■□□□□ 0.76
CCDC3-201ENST00000378825 LLGL2Q6P1M3 1020 aa19.78■□□□□ 0.76
CCDC3-201ENST00000378825 ECHDC2Q86YB7 292 aa19.78■□□□□ 0.76
CCDC3-201ENST00000378825 SRRM1Q8IYB3 904 aaKnown RBP19.78■□□□□ 0.76
CCDC3-201ENST00000378825 SYCP3Q8IZU3 236 aa19.78■□□□□ 0.76
CCDC3-201ENST00000378825 TMEM237Q96Q45 408 aa19.78■□□□□ 0.76
CCDC3-201ENST00000378825 ADAM33Q9BZ11 813 aa19.78■□□□□ 0.76
CCDC3-201ENST00000378825 PASKQ96RG2 1323 aa19.77■□□□□ 0.76
CCDC3-201ENST00000378825 EIF3DO15371 548 aaKnown RBP eCLIP19.77■□□□□ 0.76
CCDC3-201ENST00000378825 ECEL1O95672 775 aa19.77■□□□□ 0.76
CCDC3-201ENST00000378825 FOXN2P32314 431 aa19.77■□□□□ 0.76
CCDC3-201ENST00000378825 CALCOCO2Q13137 446 aa19.77■□□□□ 0.76
CCDC3-201ENST00000378825 C2CD6Q53TS8 623 aa19.77■□□□□ 0.76
CCDC3-201ENST00000378825 RBM26Q5T8P6 1007 aaKnown RBP19.77■□□□□ 0.76
CCDC3-201ENST00000378825 ASRGL1Q7L266 308 aa19.77■□□□□ 0.76
CCDC3-201ENST00000378825 ZNF564Q8TBZ8 553 aaPredicted RBP19.77■□□□□ 0.76
CCDC3-201ENST00000378825 FAM20AQ96MK3 541 aa19.77■□□□□ 0.76
CCDC3-201ENST00000378825 CBWD1Q9BRT8 395 aa19.77■□□□□ 0.76
CCDC3-201ENST00000378825 PARP2Q9UGN5 583 aa19.77■□□□□ 0.76
CCDC3-201ENST00000378825 IGLV3-22A0A075B6J6 115 aa19.77■□□□□ 0.76
CCDC3-201ENST00000378825 ABL2P42684 1182 aa19.77■□□□□ 0.76
CCDC3-201ENST00000378825 SLC8A3P57103 927 aa19.77■□□□□ 0.76
CCDC3-201ENST00000378825 CYP1B1Q16678 543 aa19.77■□□□□ 0.76
CCDC3-201ENST00000378825 MOXD1Q6UVY6 613 aa19.77■□□□□ 0.76
CCDC3-201ENST00000378825 EPS8L1Q8TE68 723 aa19.77■□□□□ 0.76
CCDC3-201ENST00000378825 CKAP2Q8WWK9 683 aa19.77■□□□□ 0.76
CCDC3-201ENST00000378825 POLR3CQ9BUI4 534 aaPredicted RBP19.77■□□□□ 0.76
CCDC3-201ENST00000378825 AMNQ9BXJ7 453 aa19.77■□□□□ 0.76
CCDC3-201ENST00000378825 PRKAG3Q9UGI9 489 aa19.77■□□□□ 0.76
CCDC3-201ENST00000378825 ZMYND8Q9ULU4 1186 aaPredicted RBP19.77■□□□□ 0.76
CCDC3-201ENST00000378825 TBX3O15119 743 aa19.76■□□□□ 0.75
CCDC3-201ENST00000378825 GJB6O95452 261 aa19.76■□□□□ 0.75
CCDC3-201ENST00000378825 GAP43P17677 238 aa19.76■□□□□ 0.75
CCDC3-201ENST00000378825 OTOP1Q7RTM1 612 aa19.76■□□□□ 0.75
CCDC3-201ENST00000378825 MICAL1Q8TDZ2 1067 aa19.76■□□□□ 0.75
CCDC3-201ENST00000378825 PAIP2Q9BPZ3 127 aaKnown RBP19.76■□□□□ 0.75
CCDC3-201ENST00000378825 ARL2BPQ9Y2Y0 163 aa19.76■□□□□ 0.75
CCDC3-201ENST00000378825 FOCADQ5VW36 1801 aa19.76■□□□□ 0.75
CCDC3-201ENST00000378825 MMP10P09238 476 aa19.76■□□□□ 0.75
CCDC3-201ENST00000378825 ITGA8P53708 1063 aa19.76■□□□□ 0.75
CCDC3-201ENST00000378825 EPC2Q52LR7 807 aa19.76■□□□□ 0.75
CCDC3-201ENST00000378825 ANKRD20A2Q5SQ80 823 aa19.76■□□□□ 0.75
CCDC3-201ENST00000378825 C1orf220Q5T0J3 134 aa19.76■□□□□ 0.75
CCDC3-201ENST00000378825 TMEM63BQ5T3F8 832 aa19.76■□□□□ 0.75
CCDC3-201ENST00000378825 ANKRD20A1Q5TYW2 823 aa19.76■□□□□ 0.75
CCDC3-201ENST00000378825 ANKRD20A3Q5VUR7 823 aa19.76■□□□□ 0.75
CCDC3-201ENST00000378825 FBXO11Q86XK2 927 aa19.76■□□□□ 0.75
CCDC3-201ENST00000378825 DAW1Q8N136 415 aa19.76■□□□□ 0.75
CCDC3-201ENST00000378825 C9orf72Q96LT7 481 aa19.76■□□□□ 0.75
CCDC3-201ENST00000378825 MKNK1Q9BUB5 465 aa19.76■□□□□ 0.75
CCDC3-201ENST00000378825 UTRNP46939 3433 aa19.76■□□□□ 0.75
CCDC3-201ENST00000378825 HADHBP55084 474 aaKnown RBP19.75■□□□□ 0.75
CCDC3-201ENST00000378825 SGO2Q562F6 1265 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 KRT27Q7Z3Y8 459 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 STMN4Q9H169 189 aaPredicted RBP19.75■□□□□ 0.75
CCDC3-201ENST00000378825 R3HDM2Q9Y2K5 976 aaKnown RBP19.75■□□□□ 0.75
CCDC3-201ENST00000378825 EME2A4GXA9 379 aaPredicted RBP19.75■□□□□ 0.75
CCDC3-201ENST00000378825 GOLGA8IPA6NC78 632 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 GOLGA8JA6NMD2 632 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 O00370 1275 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 NPR1P16066 1061 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 IVDP26440 423 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 JAG1P78504 1218 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 LRCH2Q5VUJ6 765 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 RHBDF2Q6PJF5 856 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 SH3BP5LQ7L8J4 393 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 ZNF653Q96CK0 615 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 KREMEN1Q96MU8 473 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 ETNK1Q9HBU6 452 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 RXFP1Q9HBX9 757 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 NOCTQ9UK39 431 aaKnown RBP19.75■□□□□ 0.75
CCDC3-201ENST00000378825 F5H6K3 240 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 HSPA6P17066 643 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 STX2P32856 288 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 ZNF131P52739 623 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 CERKLQ49MI3 558 aaPredicted RBP19.75■□□□□ 0.75
CCDC3-201ENST00000378825 AEBP2Q6ZN18 517 aaPredicted RBP19.75■□□□□ 0.75
CCDC3-201ENST00000378825 RPS6KC1Q96S38 1066 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 PKD2L1Q9P0L9 805 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 MTUS1Q9ULD2 1270 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 SUGT1Q9Y2Z0 365 aa19.75■□□□□ 0.75
CCDC3-201ENST00000378825 DDX39AO00148 427 aaKnown RBP19.74■□□□□ 0.75
CCDC3-201ENST00000378825 SPAG7O75391 227 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 BCRP11274 1271 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 CCND1P24385 295 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 HP1BP3Q5SSJ5 553 aaPredicted RBP19.74■□□□□ 0.75
CCDC3-201ENST00000378825 PPM1KQ8N3J5 372 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 PSPC1Q8WXF1 523 aaKnown RBP19.74■□□□□ 0.75
CCDC3-201ENST00000378825 RUNDC3BQ96NL0 473 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 HEMGNQ9BXL5 484 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 WNT8AQ9H1J5 351 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 TAOK3Q9H2K8 898 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 SLCO1B3Q9NPD5 702 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 NINJ2Q9NZG7 142 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 LTBP1Q14766 1721 aa19.74■□□□□ 0.75
CCDC3-201ENST00000378825 SLC26A4O43511 780 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms