RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 KMT5AQ9NQR1 393 aa23.88■■□□□ 1.41
CCDC28B-201ENST00000373602 ADAM28Q9UKQ2 775 aa23.88■■□□□ 1.41
CCDC28B-201ENST00000373602 TNFSF13BQ9Y275 285 aa23.88■■□□□ 1.41
CCDC28B-201ENST00000373602 THP07101 528 aa23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 HSP90AA2PQ14568 343 aaPredicted RBP23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 TMEM119Q4V9L6 283 aa23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 ATAT1Q5SQI0 421 aa23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 KIAA1841Q6NSI8 718 aa23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 KANK3Q6NY19 840 aa23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 TAS1R3Q7RTX0 852 aa23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 APBB1IPQ7Z5R6 666 aaPredicted RBP23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 GPR65Q8IYL9 337 aa23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 RABGGTAQ92696 567 aa23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 EDAQ92838 391 aa23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 CDK5RAP3Q96JB5 506 aa23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 PLIN2Q99541 437 aa23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 PAAF1Q9BRP4 392 aa23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 BACH2Q9BYV9 841 aa23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 CXCL16Q9H2A7 254 aa23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 SFXN1Q9H9B4 322 aa23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 CACNG4Q9UBN1 327 aa23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 GDAQ9Y2T3 454 aa23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 NR2E1Q9Y466 385 aa23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 RBM19Q9Y4C8 960 aaKnown RBP23.87■■□□□ 1.41
CCDC28B-201ENST00000373602 TEX28O15482 410 aa23.86■■□□□ 1.41
CCDC28B-201ENST00000373602 SLC26A4O43511 780 aa23.86■■□□□ 1.41
CCDC28B-201ENST00000373602 BMP15O95972 392 aa23.86■■□□□ 1.41
CCDC28B-201ENST00000373602 ADH1AP07327 375 aa23.86■■□□□ 1.41
CCDC28B-201ENST00000373602 WEE2P0C1S8 567 aa23.86■■□□□ 1.41
CCDC28B-201ENST00000373602 SLC12A3P55017 1021 aa23.86■■□□□ 1.41
CCDC28B-201ENST00000373602 NAB2Q15742 525 aa23.86■■□□□ 1.41
CCDC28B-201ENST00000373602 ACO2Q99798 780 aaKnown RBP23.86■■□□□ 1.41
CCDC28B-201ENST00000373602 NTPCRQ9BSD7 190 aaKnown RBP23.86■■□□□ 1.41
CCDC28B-201ENST00000373602 MRPL4Q9BYD3 311 aaKnown RBP23.86■■□□□ 1.41
CCDC28B-201ENST00000373602 PTPRHQ9HD43 1115 aa23.86■■□□□ 1.41
CCDC28B-201ENST00000373602 KCND2Q9NZV8 630 aa23.86■■□□□ 1.41
CCDC28B-201ENST00000373602 HCN4Q9Y3Q4 1203 aa23.86■■□□□ 1.41
CCDC28B-201ENST00000373602 CASTOR2A6NHX0 329 aa23.85■■□□□ 1.41
CCDC28B-201ENST00000373602 SFI1A8K8P3 1242 aa23.85■■□□□ 1.41
CCDC28B-201ENST00000373602 TADA2AO75478 443 aa23.85■■□□□ 1.41
CCDC28B-201ENST00000373602 PLA2G4BP0C869 781 aa23.85■■□□□ 1.41
CCDC28B-201ENST00000373602 USP41Q3LFD5 358 aa23.85■■□□□ 1.41
CCDC28B-201ENST00000373602 TMC5Q6UXY8 1006 aa23.85■■□□□ 1.41
CCDC28B-201ENST00000373602 SPIRE2Q8WWL2 714 aa23.85■■□□□ 1.41
CCDC28B-201ENST00000373602 B3GALT6Q96L58 329 aa23.85■■□□□ 1.41
CCDC28B-201ENST00000373602 KCNG1Q9UIX4 513 aa23.85■■□□□ 1.41
CCDC28B-201ENST00000373602 ARIH1Q9Y4X5 557 aaPredicted RBP23.85■■□□□ 1.41
CCDC28B-201ENST00000373602 SLC16A4O15374 487 aa23.84■■□□□ 1.41
CCDC28B-201ENST00000373602 PDCP20941 246 aa23.84■■□□□ 1.41
CCDC28B-201ENST00000373602 SP100P23497 879 aaPredicted RBP23.84■■□□□ 1.41
CCDC28B-201ENST00000373602 ZXDAP98168 799 aa23.84■■□□□ 1.41
CCDC28B-201ENST00000373602 RAD51AP2Q09MP3 1159 aa23.84■■□□□ 1.41
CCDC28B-201ENST00000373602 GPR149Q86SP6 731 aa23.84■■□□□ 1.41
CCDC28B-201ENST00000373602 CDT1Q9H211 546 aa23.84■■□□□ 1.41
CCDC28B-201ENST00000373602 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP23.84■■□□□ 1.41
CCDC28B-201ENST00000373602 VPS37CA5D8V6 355 aaPredicted RBP23.83■■□□□ 1.41
CCDC28B-201ENST00000373602 C1RP00736 705 aa23.83■■□□□ 1.41
CCDC28B-201ENST00000373602 PLS3P13797 630 aa23.83■■□□□ 1.41
CCDC28B-201ENST00000373602 UBA7P41226 1012 aa23.83■■□□□ 1.41
CCDC28B-201ENST00000373602 SF3A1Q15459 793 aaKnown RBP23.83■■□□□ 1.41
CCDC28B-201ENST00000373602 FEZF2Q8TBJ5 459 aa23.83■■□□□ 1.41
CCDC28B-201ENST00000373602 TARS2Q9BW92 718 aaKnown RBP23.83■■□□□ 1.41
CCDC28B-201ENST00000373602 MAN1C1Q9NR34 630 aa23.83■■□□□ 1.41
CCDC28B-201ENST00000373602 TSHZ2Q9NRE2 1034 aa23.83■■□□□ 1.41
CCDC28B-201ENST00000373602 FNIP2Q9P278 1114 aa23.83■■□□□ 1.41
CCDC28B-201ENST00000373602 SF3B1O75533 1304 aaKnown RBP eCLIP23.83■■□□□ 1.4
CCDC28B-201ENST00000373602 SPDYE4A6NLX3 237 aa23.82■■□□□ 1.4
CCDC28B-201ENST00000373602 C2CD4DB7Z1M9 353 aa23.82■■□□□ 1.4
CCDC28B-201ENST00000373602 KIF4AO95239 1232 aa23.82■■□□□ 1.4
CCDC28B-201ENST00000373602 GLUD1P00367 558 aa23.82■■□□□ 1.4
CCDC28B-201ENST00000373602 PROZP22891 400 aa23.82■■□□□ 1.4
CCDC28B-201ENST00000373602 GRM5P41594 1212 aa23.82■■□□□ 1.4
CCDC28B-201ENST00000373602 ZNF568Q3ZCX4 644 aa23.82■■□□□ 1.4
CCDC28B-201ENST00000373602 TRIM67Q6ZTA4 783 aa23.82■■□□□ 1.4
CCDC28B-201ENST00000373602 CEP120Q8N960 986 aa23.82■■□□□ 1.4
CCDC28B-201ENST00000373602 CMASQ8NFW8 434 aaPredicted RBP23.82■■□□□ 1.4
CCDC28B-201ENST00000373602 RIN2Q8WYP3 895 aaPredicted RBP23.82■■□□□ 1.4
CCDC28B-201ENST00000373602 CALML4Q96GE6 196 aa23.82■■□□□ 1.4
CCDC28B-201ENST00000373602 PPP1R10Q96QC0 940 aaKnown RBP23.82■■□□□ 1.4
CCDC28B-201ENST00000373602 DPP7Q9UHL4 492 aa23.82■■□□□ 1.4
CCDC28B-201ENST00000373602 TECTAO75443 2155 aa23.82■■□□□ 1.4
CCDC28B-201ENST00000373602 ABLIM1O14639 778 aa23.81■■□□□ 1.4
CCDC28B-201ENST00000373602 LONP1P36776 959 aaKnown RBP23.81■■□□□ 1.4
CCDC28B-201ENST00000373602 SMTNP53814 917 aa23.81■■□□□ 1.4
CCDC28B-201ENST00000373602 CREMQ03060 361 aa23.81■■□□□ 1.4
CCDC28B-201ENST00000373602 GRIN1Q05586 938 aa23.81■■□□□ 1.4
CCDC28B-201ENST00000373602 PTPN21Q16825 1174 aa23.81■■□□□ 1.4
CCDC28B-201ENST00000373602 ARSHQ5FYA8 562 aa23.81■■□□□ 1.4
CCDC28B-201ENST00000373602 ELMSAN1Q6PJG2 1045 aa23.81■■□□□ 1.4
CCDC28B-201ENST00000373602 C15orf39Q6ZRI6 1047 aa23.81■■□□□ 1.4
CCDC28B-201ENST00000373602 HFE2Q6ZVN8 426 aa23.81■■□□□ 1.4
CCDC28B-201ENST00000373602 TMEM161BQ8NDZ6 487 aa23.81■■□□□ 1.4
CCDC28B-201ENST00000373602 HASPINQ8TF76 798 aa23.81■■□□□ 1.4
CCDC28B-201ENST00000373602 HDAC7Q8WUI4 952 aa23.81■■□□□ 1.4
CCDC28B-201ENST00000373602 CCDC94Q9BW85 323 aaPredicted RBP23.81■■□□□ 1.4
CCDC28B-201ENST00000373602 USTQ9Y2C2 406 aa23.81■■□□□ 1.4
CCDC28B-201ENST00000373602 NPHP3-ACAD11A0A0J9YXS1 232 aa23.8■■□□□ 1.4
CCDC28B-201ENST00000373602 BRD1O95696 1058 aa23.8■■□□□ 1.4
CCDC28B-201ENST00000373602 MAPTP10636 758 aaKnown RBP23.8■■□□□ 1.4
CCDC28B-201ENST00000373602 MCF2P10911 925 aa23.8■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms