RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 PCDHB4Q9Y5E5 795 aa9.93□□□□□ -0.82
UPF2-202ENST00000357604 KRT9P35527 623 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 ARL2P36404 184 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 MAN2A1Q16706 1144 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 UGCGQ16739 394 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 TIGD5Q53EQ6 642 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 OR6B3Q8NGW1 331 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 NCKAP1LP55160 1127 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 SGSM1Q2NKQ1 1148 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 CCDC149Q6ZUS6 474 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 ANKRD33Q7Z3H0 272 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 WDR49Q8IV35 697 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 TMEM161AQ9NX61 479 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 SPG21Q9NZD8 308 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 PADI3Q9ULW8 664 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 M0R2N6 131 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 P4HA2O15460 535 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 IQCF3P0C7M6 154 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 TNFAIP3P21580 790 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 GRM5P41594 1212 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 MRE11P49959 708 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 ST3GAL1Q11201 340 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 DPYDQ12882 1025 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 E2F5Q15329 346 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 FBXO47Q5MNV8 452 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 RNF34Q969K3 372 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 CNOT6LQ96LI5 555 aaKnown RBP9.92□□□□□ -0.82
UPF2-202ENST00000357604 C16orf70Q9BSU1 422 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 LSM14BQ9BX40 385 aaKnown RBP9.92□□□□□ -0.82
UPF2-202ENST00000357604 LMBRD1Q9NUN5 540 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 LCMT1Q9UIC8 334 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 OPLAHO14841 1288 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 GADD45BO75293 160 aaPredicted RBP9.92□□□□□ -0.82
UPF2-202ENST00000357604 POLR2BP30876 1174 aaKnown RBP9.92□□□□□ -0.82
UPF2-202ENST00000357604 SP2Q02086 613 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 CCDC173Q0VFZ6 552 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 KRT39Q6A163 491 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 ANO5Q75V66 913 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 KIAA1328Q86T90 577 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 SLC12A6Q9UHW9 1150 aa9.92□□□□□ -0.82
UPF2-202ENST00000357604 SF3B1O75533 1304 aaKnown RBP eCLIP9.91□□□□□ -0.82
UPF2-202ENST00000357604 KIAA0355O15063 1070 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 IGFBP4P22692 258 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 SSR1P43307 286 aaKnown RBP9.91□□□□□ -0.82
UPF2-202ENST00000357604 LHX1P48742 406 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 C1orf53Q5VUE5 145 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 RNF214Q8ND24 703 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 ALDH1A3P47895 512 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 POU5F1Q01860 360 aaKnown RBP9.91□□□□□ -0.82
UPF2-202ENST00000357604 PTK2Q05397 1052 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 EARS2Q5JPH6 523 aaKnown RBP9.91□□□□□ -0.82
UPF2-202ENST00000357604 C1orf186Q6ZWK4 172 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 OTOP2Q7RTS6 562 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 MAP4K3Q8IVH8 894 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 CMTR2Q8IYT2 770 aaKnown RBP9.91□□□□□ -0.82
UPF2-202ENST00000357604 FMR1NBQ8N0W7 255 aaPredicted RBP9.91□□□□□ -0.82
UPF2-202ENST00000357604 TRIM11Q96F44 468 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 PNMA5Q96PV4 448 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 TGS1Q96RS0 853 aaKnown RBP9.91□□□□□ -0.82
UPF2-202ENST00000357604 PAXBP1Q9Y5B6 917 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 MYADML2A6NDP7 307 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 CAPSQ13938 189 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 EXOC3L4Q17RC7 722 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 AAK1Q2M2I8 961 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 DNTTIP2Q5QJE6 756 aaKnown RBP9.91□□□□□ -0.82
UPF2-202ENST00000357604 ARHGAP18Q8N392 663 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 CGRRF1Q99675 332 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 DHX33Q9H6R0 707 aaKnown RBP9.91□□□□□ -0.82
UPF2-202ENST00000357604 PRRG1O14668 218 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 CYP3A5P20815 502 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 CYLC1P35663 651 aaPredicted RBP9.91□□□□□ -0.82
UPF2-202ENST00000357604 SNRNP35Q16560 246 aaKnown RBP9.91□□□□□ -0.82
UPF2-202ENST00000357604 TMC7Q7Z402 723 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 RAD9AQ99638 391 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 FAM105AQ9NUU6 356 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 PCDHA5Q9Y5H7 936 aa9.91□□□□□ -0.82
UPF2-202ENST00000357604 MYBP10242 640 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 ACRP10323 421 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 STAT1P42224 750 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 PKP1Q13835 747 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 ZNF720Q7Z2F6 126 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 TARS2Q9BW92 718 aaKnown RBP9.9□□□□□ -0.82
UPF2-202ENST00000357604 SLC35G1Q2M3R5 365 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 DCLRE1AQ6PJP8 1040 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 KIAA0319LQ8IZA0 1049 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 HELQQ8TDG4 1101 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 CCDC113Q9H0I3 377 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 GPRC5CQ9NQ84 441 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 SNTG2Q9NY99 539 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 OTOFQ9HC10 1997 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 DHX15O43143 795 aaKnown RBP9.9□□□□□ -0.82
UPF2-202ENST00000357604 ACTN4O43707 911 aaKnown RBP9.9□□□□□ -0.82
UPF2-202ENST00000357604 KLRC2P26717 231 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 GBP1P32455 592 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 LRRC26Q2I0M4 334 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 USP41Q3LFD5 358 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 SIX6OS1Q8N1H7 587 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 TMEM86AQ8N2M4 240 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 TMC2Q8TDI7 906 aa9.9□□□□□ -0.82
UPF2-202ENST00000357604 SAAL1Q96ER3 474 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms