RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 TSPYL2Q9H2G4 693 aaPredicted RBP4.4□□□□□ -1.71
LIG4-201ENST00000356922 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.4□□□□□ -1.71
LIG4-201ENST00000356922 RGS18Q9NS28 235 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 PRMT7Q9NVM4 692 aaPredicted RBP4.4□□□□□ -1.71
LIG4-201ENST00000356922 TANC1Q9C0D5 1861 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 VPS13AQ96RL7 3174 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 PDXKO00764 312 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 PPEF2O14830 753 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 GPR182O15218 404 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 CLSTN1O94985 981 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 CST3P01034 146 aaPredicted RBP4.4□□□□□ -1.71
LIG4-201ENST00000356922 NR3C1P04150 777 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 LINC00271P0C7V0 271 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 NR2F2P24468 414 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 PBX2P40425 430 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 ZNF165P49910 485 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 WDR5P61964 334 aaKnown RBP4.4□□□□□ -1.71
LIG4-201ENST00000356922 ZNF568Q3ZCX4 644 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 MPZL3Q6UWV2 235 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 ZPBP2Q6X784 338 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 EFCAB13Q8IY85 973 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 TRIML1Q8N9V2 468 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 MLKLQ8NB16 471 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 BICD1Q96G01 975 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 GAD1Q99259 594 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 PRKAG2Q9UGJ0 569 aa4.4□□□□□ -1.71
LIG4-201ENST00000356922 CPSF3Q9UKF6 684 aaKnown RBP4.4□□□□□ -1.71
LIG4-201ENST00000356922 AGO2Q9UKV8 859 aaKnown RBP4.4□□□□□ -1.71
LIG4-201ENST00000356922 LACTBL1A8MY62 500 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 M0QZ92 97 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 DDHD2O94830 711 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 TRIM49P0CI25 452 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 TRIM49CP0CI26 452 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 SFPQP23246 707 aaKnown RBP eCLIP4.39□□□□□ -1.71
LIG4-201ENST00000356922 PPP3CAQ08209 521 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 STRN3Q13033 797 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 PAK1Q13153 545 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 CEP135Q66GS9 1140 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 SLC27A1Q6PCB7 646 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 TMEM173Q86WV6 379 aaPredicted RBP4.39□□□□□ -1.71
LIG4-201ENST00000356922 ECHDC2Q86YB7 292 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 ZC3H3Q8IXZ2 948 aaKnown RBP4.39□□□□□ -1.71
LIG4-201ENST00000356922 CXorf38Q8TB03 319 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 CCDC127Q96BQ5 260 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 PRIMPOLQ96LW4 560 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 NAP1L5Q96NT1 182 aaPredicted RBP4.39□□□□□ -1.71
LIG4-201ENST00000356922 MSTO1Q9BUK6 570 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 SEZ6LQ9BYH1 1024 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 C2orf40Q9H1Z8 148 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 IL23AQ9NPF7 189 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 TYW1Q9NV66 732 aaKnown RBP4.39□□□□□ -1.71
LIG4-201ENST00000356922 RMND1Q9NWS8 449 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 DNAJB4Q9UDY4 337 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 RWDD2AQ9UIY3 292 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 NFE2L3Q9Y4A8 694 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 MICAL3Q7RTP6 2002 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 TTC26A0AVF1 554 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 ARL5CA6NH57 179 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 CAND2O75155 1236 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 OFD1O75665 1012 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 RECQL4O94761 1208 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 POMCP01189 267 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 ITGB1P05556 798 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 ZNF18P17022 549 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 MLH1P40692 756 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 FPGSQ05932 587 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 SNRNP35Q16560 246 aaKnown RBP4.39□□□□□ -1.71
LIG4-201ENST00000356922 ARMCX5Q6P1M9 558 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 NOTUMQ6P988 496 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 SLC24A5Q71RS6 500 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 CREBRFQ8IUR6 639 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 CSGALNACT2Q8N6G5 542 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 C3orf58Q8NDZ4 430 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 TOP1MTQ969P6 601 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 FAM212AQ96EL1 285 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 DHTKD1Q96HY7 919 aaPredicted RBP4.39□□□□□ -1.71
LIG4-201ENST00000356922 HTATIP2Q9BUP3 242 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 PRO3102Q9H379 93 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 INTS13Q9NVM9 706 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 HOOK1Q9UJC3 728 aaKnown RBP4.39□□□□□ -1.71
LIG4-201ENST00000356922 SQORQ9Y6N5 450 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 ANK1P16157 1881 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 SMIM28A0A1B0GU29 152 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 NT5C1B-RDH14C9J2C7 533 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 ZNF623O75123 536 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 NFICP08651 508 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 CCDC192P0DO97 292 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 CDC42EP1Q00587 391 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 NOLC1Q14978 699 aaKnown RBP eCLIP4.39□□□□□ -1.71
LIG4-201ENST00000356922 STX1AQ16623 288 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 CBWD6Q4V339 395 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 CBWD3Q5JTY5 395 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 MIIPQ5JXC2 388 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 CBWD5Q5RIA9 395 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 RASIP1Q5U651 963 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 CDKAL1Q5VV42 579 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 CD300LGQ6UXG3 332 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 MRPL10Q7Z7H8 261 aaKnown RBP4.39□□□□□ -1.71
LIG4-201ENST00000356922 TMEM199Q8N511 208 aa4.39□□□□□ -1.71
LIG4-201ENST00000356922 HELQQ8TDG4 1101 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms