RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 CAPSQ13938 189 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 TDRD12Q587J7 1177 aaKnown RBP13.85□□□□□ -0.19
CLK3-201ENST00000345005 GJC2Q5T442 439 aaPredicted RBP13.85□□□□□ -0.19
CLK3-201ENST00000345005 ALS2CLQ60I27 953 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 RPAINQ86UA6 219 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 CBWD2Q8IUF1 395 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 VTI1AQ96AJ9 217 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 SAAL1Q96ER3 474 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 NCAPGQ9BPX3 1015 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 INTS2Q9H0H0 1204 aaKnown RBP13.85□□□□□ -0.19
CLK3-201ENST00000345005 C2orf40Q9H1Z8 148 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 RNF14Q9UBS8 474 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 ZSWIM8A7E2V4 1837 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 ZNF233A6NK53 670 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 EXTL3O43909 919 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 TACC1O75410 805 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 SYF2O95926 243 aaKnown RBP13.85□□□□□ -0.19
CLK3-201ENST00000345005 LDHAP00338 332 aaKnown RBP13.85□□□□□ -0.19
CLK3-201ENST00000345005 GTF2H1P32780 548 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 GTF2A1P52655 376 aaPredicted RBP13.85□□□□□ -0.19
CLK3-201ENST00000345005 JAM2P57087 298 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 KLHL30Q0D2K2 578 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 TFDP1Q14186 410 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 GLE1Q53GS7 698 aaKnown RBP13.85□□□□□ -0.19
CLK3-201ENST00000345005 C1orf220Q5T0J3 134 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 ZBTB8OSQ8IWT0 167 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 PARD3BQ8TEW8 1205 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 MYCBPQ99417 103 aaPredicted RBP13.85□□□□□ -0.19
CLK3-201ENST00000345005 STK33Q9BYT3 514 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 RNPEPQ9H4A4 650 aa13.85□□□□□ -0.19
CLK3-201ENST00000345005 SUCLA2Q9P2R7 463 aaPredicted RBP13.85□□□□□ -0.19
CLK3-201ENST00000345005 COL1A2P08123 1366 aa13.84□□□□□ -0.19
CLK3-201ENST00000345005 A0A0U1RQJ8 604 aa13.84□□□□□ -0.19
CLK3-201ENST00000345005 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.84□□□□□ -0.19
CLK3-201ENST00000345005 FAM155AB1AL88 458 aaPredicted RBP13.84□□□□□ -0.19
CLK3-201ENST00000345005 MAGEB2O15479 319 aa13.84□□□□□ -0.19
CLK3-201ENST00000345005 SMPD1P17405 629 aa13.84□□□□□ -0.19
CLK3-201ENST00000345005 TCP1P17987 556 aaKnown RBP13.84□□□□□ -0.19
CLK3-201ENST00000345005 STAT1P42224 750 aa13.84□□□□□ -0.19
CLK3-201ENST00000345005 GCLMP48507 274 aa13.84□□□□□ -0.19
CLK3-201ENST00000345005 VAV2P52735 878 aa13.84□□□□□ -0.19
CLK3-201ENST00000345005 CYP24A1Q07973 514 aa13.84□□□□□ -0.19
CLK3-201ENST00000345005 PPP3CAQ08209 521 aa13.84□□□□□ -0.19
CLK3-201ENST00000345005 MKRN4PQ13434 485 aaPredicted RBP13.84□□□□□ -0.19
CLK3-201ENST00000345005 DRP2Q13474 957 aa13.84□□□□□ -0.19
CLK3-201ENST00000345005 ASTE1Q2TB18 679 aaPredicted RBP13.84□□□□□ -0.19
CLK3-201ENST00000345005 CDCA2Q69YH5 1023 aaPredicted RBP13.84□□□□□ -0.19
CLK3-201ENST00000345005 EFCAB12Q6NXP0 572 aa13.84□□□□□ -0.19
CLK3-201ENST00000345005 IRF2BP2Q7Z5L9 587 aa13.84□□□□□ -0.19
CLK3-201ENST00000345005 OR6J1Q8NGC5 347 aa13.84□□□□□ -0.19
CLK3-201ENST00000345005 PLEKHO2Q8TD55 490 aa13.84□□□□□ -0.19
CLK3-201ENST00000345005 ATRIPQ8WXE1 791 aa13.84□□□□□ -0.19
CLK3-201ENST00000345005 SECISBP2LQ93073 1101 aaKnown RBP13.84□□□□□ -0.19
CLK3-201ENST00000345005 LUC7LQ9NQ29 371 aaKnown RBP13.84□□□□□ -0.19
CLK3-201ENST00000345005 APEX2Q9UBZ4 518 aa13.84□□□□□ -0.19
CLK3-201ENST00000345005 TSKSQ9UJT2 592 aa13.84□□□□□ -0.19
CLK3-201ENST00000345005 AGO2Q9UKV8 859 aaKnown RBP13.84□□□□□ -0.19
CLK3-201ENST00000345005 USP20Q9Y2K6 914 aa13.84□□□□□ -0.19
CLK3-201ENST00000345005 PCDHA13Q9Y5I0 950 aa13.84□□□□□ -0.19
CLK3-201ENST00000345005 GOLGA6BA6NDN3 693 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 SRGAP2CP0DJJ0 459 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 HOXD8P13378 290 aaPredicted RBP13.83□□□□□ -0.2
CLK3-201ENST00000345005 INSRRP14616 1297 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 FERP16591 822 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 ANXA13P27216 316 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 TNFRSF8P28908 595 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 PRKCIP41743 596 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 TM4SF4P48230 202 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 MXI1P50539 228 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 CYP27A1Q02318 531 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 TNFAIP2Q03169 654 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 ARID5AQ03989 594 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 NNTQ13423 1086 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 DGKDQ16760 1214 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 EPC2Q52LR7 807 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 ZPBP2Q6X784 338 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 LRRC71Q8N4P6 559 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 LMO3Q8TAP4 145 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 USP6NLQ92738 828 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 HHIPL1Q96JK4 782 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 ALS2CR12Q96Q35 445 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 FAM213AQ9BRX8 229 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 IFIH1Q9BYX4 1025 aaKnown RBP13.83□□□□□ -0.2
CLK3-201ENST00000345005 DNAJC12Q9UKB3 198 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 ABT1Q9ULW3 272 aaKnown RBP13.83□□□□□ -0.2
CLK3-201ENST00000345005 GOLGA6CA6NDK9 693 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 H3BRB1 525 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 RBAK-RBAKDNI3L0D1 243 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 EBAG9O00559 213 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 ZNF263O14978 683 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 ATP1A1P05023 1023 aaKnown RBP13.83□□□□□ -0.2
CLK3-201ENST00000345005 CCDC172P0C7W6 258 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 GOLGA6DP0CG33 693 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 USP8P40818 1118 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 RGS2P41220 211 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 MATR3P43243 847 aaKnown RBP eCLIP13.83□□□□□ -0.2
CLK3-201ENST00000345005 MAGEA1P43355 309 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 KRT39Q6A163 491 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 EMBQ6PCB8 327 aa13.83□□□□□ -0.2
CLK3-201ENST00000345005 METTL13Q8N6R0 699 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms