RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 CELF4Q9BZC1 486 aaKnown RBP8.68□□□□□ -1.02
ATG4A-201ENST00000343524 TRIM31Q9BZY9 425 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 UBN1Q9NPG3 1134 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 RNF181Q9P0P0 153 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 ARMCX3Q9UH62 379 aaPredicted RBP8.68□□□□□ -1.02
ATG4A-201ENST00000343524 BCORQ6W2J9 1755 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 DLEC1Q9Y238 1755 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 FGGP02679 453 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 MYL6BP14649 208 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 VCAM1P19320 739 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 HMGB2P26583 209 aaKnown RBP8.68□□□□□ -1.02
ATG4A-201ENST00000343524 VEGFBP49765 207 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 SLC18A1P54219 525 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 ADARP55265 1226 aaKnown RBP8.68□□□□□ -1.02
ATG4A-201ENST00000343524 OXCT1P55809 520 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 CALCOCO2Q13137 446 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.68□□□□□ -1.02
ATG4A-201ENST00000343524 EARS2Q5JPH6 523 aaKnown RBP8.68□□□□□ -1.02
ATG4A-201ENST00000343524 GALNT17Q6IS24 598 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 CGB2Q6NT52 195 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 ZDHHC24Q6UX98 284 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 B3GNT6Q6ZMB0 384 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 PIK3AP1Q6ZUJ8 805 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 IFNL3Q8IZI9 196 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 ANKRD42Q8N9B4 389 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 FBXO25Q8TCJ0 367 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 DIS3LQ8TF46 1054 aaKnown RBP8.68□□□□□ -1.02
ATG4A-201ENST00000343524 SLC35B4Q969S0 331 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 CEP63Q96MT8 703 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 CCDC77Q9BR77 488 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 PUS3Q9BZE2 481 aaKnown RBP8.68□□□□□ -1.02
ATG4A-201ENST00000343524 PRDM16Q9HAZ2 1276 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 UTP6Q9NYH9 597 aaKnown RBP8.68□□□□□ -1.02
ATG4A-201ENST00000343524 BTBD7Q9P203 1132 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 LGALS13Q9UHV8 139 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 ZFP69BQ9UJL9 534 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 CHMP2BQ9UQN3 213 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 CHKBQ9Y259 395 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 COL4A3BPQ9Y5P4 624 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 SLC4A4Q9Y6R1 1079 aa8.68□□□□□ -1.02
ATG4A-201ENST00000343524 RGPD5Q99666 1765 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 KAT6BQ8WYB5 2073 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 CCDC162PA2VCL2 907 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 GOLGA8CPA6NN73 597 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 DDX3XO00571 662 aaKnown RBP eCLIP8.67□□□□□ -1.02
ATG4A-201ENST00000343524 TLR2O60603 784 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 H2AFZP0C0S5 128 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 UBTFL6P0CB48 400 aaPredicted RBP8.67□□□□□ -1.02
ATG4A-201ENST00000343524 ITGA4P13612 1032 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 COL9A1P20849 921 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 POLR2FP61218 127 aaKnown RBP8.67□□□□□ -1.02
ATG4A-201ENST00000343524 MAP3K21Q5TCX8 1036 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 H2AFVQ71UI9 128 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 NT5DC3Q86UY8 548 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 SLF2Q8IX21 1173 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 CCDC82Q8N4S0 544 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 ANKLE1Q8NAG6 615 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 ERMNQ8TAM6 284 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 DGCR14Q96DF8 476 aaKnown RBP8.67□□□□□ -1.02
ATG4A-201ENST00000343524 MPP4Q96JB8 637 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 STRBPQ96SI9 672 aaKnown RBP8.67□□□□□ -1.02
ATG4A-201ENST00000343524 BTBD10Q9BSF8 475 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 BRD8Q9H0E9 1235 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 SH3GLB2Q9NR46 395 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 STK17AQ9UEE5 414 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 PCYOX1Q9UHG3 505 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 ADAMTS1Q9UHI8 967 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 DENND2AQ9ULE3 1009 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 NUB1Q9Y5A7 615 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 NCANO14594 1321 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 DOCK2Q92608 1830 aa8.67□□□□□ -1.02
ATG4A-201ENST00000343524 ANKRD36CQ5JPF3 1778 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 MIF4GDA9UHW6 222 aaKnown RBP8.66□□□□□ -1.02
ATG4A-201ENST00000343524 C2CD2LO14523 706 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 CBFA2T3O75081 653 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 CDH16O75309 829 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 ASMTLO95671 621 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 UQCRFS1P1P0C7P4 283 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 PCP11498 1178 aaKnown RBP8.66□□□□□ -1.02
ATG4A-201ENST00000343524 IL2RBP14784 551 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 PORP16435 677 aaPredicted RBP8.66□□□□□ -1.02
ATG4A-201ENST00000343524 CYP11B2P19099 503 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 TAC1P20366 129 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 CRABP2P29373 138 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 PRKCIP41743 596 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 SLCO1A2P46721 670 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 AP2B1P63010 937 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 IRX4P78413 519 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 ARHGAP4P98171 946 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 CAV1Q03135 178 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 STK4Q13043 487 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 ORC2Q13416 577 aaPredicted RBP8.66□□□□□ -1.02
ATG4A-201ENST00000343524 MOGSQ13724 837 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 SPARCL1Q14515 664 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 IL17AQ16552 155 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 KHDC1Q4VXA5 237 aaKnown RBP8.66□□□□□ -1.02
ATG4A-201ENST00000343524 ZNF449Q6P9G9 518 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 CABP7Q86V35 215 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 ATP11CQ8NB49 1132 aa8.66□□□□□ -1.02
ATG4A-201ENST00000343524 GDAP1Q8TB36 358 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms