RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 VPS36Q86VN1 386 aa14.48□□□□□ -0.09
HMGB1-202ENST00000339872 ZNF516Q92618 1163 aa14.48□□□□□ -0.09
HMGB1-202ENST00000339872 FZD8Q9H461 694 aa14.48□□□□□ -0.09
HMGB1-202ENST00000339872 A0A087WZ62 844 aa14.48□□□□□ -0.09
HMGB1-202ENST00000339872 FOXN3O00409 490 aaPredicted RBP14.48□□□□□ -0.09
HMGB1-202ENST00000339872 DYNC1I1O14576 645 aa14.48□□□□□ -0.09
HMGB1-202ENST00000339872 PJA2O43164 708 aa14.48□□□□□ -0.09
HMGB1-202ENST00000339872 B4GALT5O43286 388 aa14.48□□□□□ -0.09
HMGB1-202ENST00000339872 CTIFO43310 598 aaKnown RBP14.48□□□□□ -0.09
HMGB1-202ENST00000339872 CCDC172P0C7W6 258 aa14.48□□□□□ -0.09
HMGB1-202ENST00000339872 TNFSF9P41273 254 aa14.48□□□□□ -0.09
HMGB1-202ENST00000339872 CLDN10P78369 228 aa14.48□□□□□ -0.09
HMGB1-202ENST00000339872 IRX5P78411 483 aaPredicted RBP14.48□□□□□ -0.09
HMGB1-202ENST00000339872 KAT5Q92993 513 aa14.48□□□□□ -0.09
HMGB1-202ENST00000339872 NT5C1BQ96P26 610 aa14.48□□□□□ -0.09
HMGB1-202ENST00000339872 MAP7D2Q96T17 732 aa14.48□□□□□ -0.09
HMGB1-202ENST00000339872 FDXACB1Q9BRP7 624 aaPredicted RBP14.48□□□□□ -0.09
HMGB1-202ENST00000339872 NFKBIZQ9BYH8 718 aa14.48□□□□□ -0.09
HMGB1-202ENST00000339872 IFT122Q9HBG6 1241 aa14.48□□□□□ -0.09
HMGB1-202ENST00000339872 PTPRJQ12913 1337 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 MCL1Q07820 350 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 ZNF568Q3ZCX4 644 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 MARCH8Q5T0T0 291 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 ATF7IP2Q5U623 682 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 C15orf39Q6ZRI6 1047 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 VTI1AQ96AJ9 217 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 ELMO3Q96BJ8 720 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 ARHGAP39Q9C0H5 1083 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 SETD4Q9NVD3 440 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 MRFAP1Q9Y605 127 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 ABLIM1O14639 778 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 OGTO15294 1046 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 FAM189A1O60320 539 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 CSDE1O75534 798 aaKnown RBP14.47□□□□□ -0.09
HMGB1-202ENST00000339872 F2P00734 622 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 IQCF3P0C7M6 154 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 ANXA13P27216 316 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 FCGRTP55899 365 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 BIRC3Q13489 604 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 KIAA0753Q2KHM9 967 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 MPZL3Q6UWV2 235 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 TSHZ1Q6ZSZ6 1077 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 CDR2LQ86X02 465 aaPredicted RBP14.47□□□□□ -0.09
HMGB1-202ENST00000339872 PPP1R13LQ8WUF5 828 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 LMBR1Q8WVP7 490 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 SCLT1Q96NL6 688 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 CGRRF1Q99675 332 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 PI4K2AQ9BTU6 479 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 PRMT7Q9NVM4 692 aaPredicted RBP14.47□□□□□ -0.09
HMGB1-202ENST00000339872 NAGPAQ9UK23 515 aa14.47□□□□□ -0.09
HMGB1-202ENST00000339872 MOCS3O95396 460 aa14.46□□□□□ -0.09
HMGB1-202ENST00000339872 USP8P40818 1118 aa14.46□□□□□ -0.09
HMGB1-202ENST00000339872 PIK3CAP42336 1068 aa14.46□□□□□ -0.09
HMGB1-202ENST00000339872 PSMC4P43686 418 aa14.46□□□□□ -0.09
HMGB1-202ENST00000339872 CPT1AP50416 773 aa14.46□□□□□ -0.09
HMGB1-202ENST00000339872 MFAP3P55082 362 aa14.46□□□□□ -0.09
HMGB1-202ENST00000339872 POU5F1BQ06416 359 aa14.46□□□□□ -0.09
HMGB1-202ENST00000339872 BMS1Q14692 1282 aaKnown RBP14.46□□□□□ -0.09
HMGB1-202ENST00000339872 KIF22Q14807 665 aa14.46□□□□□ -0.09
HMGB1-202ENST00000339872 ZACNQ401N2 412 aa14.46□□□□□ -0.09
HMGB1-202ENST00000339872 TDRD10Q5VZ19 366 aaKnown RBP14.46□□□□□ -0.09
HMGB1-202ENST00000339872 BRSK2Q8IWQ3 736 aa14.46□□□□□ -0.09
HMGB1-202ENST00000339872 NLRP7Q8WX94 980 aa14.46□□□□□ -0.09
HMGB1-202ENST00000339872 KREMEN1Q96MU8 473 aa14.46□□□□□ -0.09
HMGB1-202ENST00000339872 PACSIN1Q9BY11 444 aa14.46□□□□□ -0.09
HMGB1-202ENST00000339872 AP5M1Q9H0R1 490 aa14.46□□□□□ -0.09
HMGB1-202ENST00000339872 CAPN6Q9Y6Q1 641 aa14.46□□□□□ -0.09
HMGB1-202ENST00000339872 CNTNAP2Q9UHC6 1331 aa14.46□□□□□ -0.09
HMGB1-202ENST00000339872 RRN3P2A6NIE6 340 aa14.46□□□□□ -0.1
HMGB1-202ENST00000339872 TBC1D8O95759 1140 aa14.46□□□□□ -0.1
HMGB1-202ENST00000339872 ALDH1A1P00352 501 aa14.46□□□□□ -0.1
HMGB1-202ENST00000339872 C4BPAP04003 597 aaKnown RBP14.46□□□□□ -0.1
HMGB1-202ENST00000339872 SMIM10L2AP0DMW4 78 aa14.46□□□□□ -0.1
HMGB1-202ENST00000339872 SMIM10L2BP0DMW5 78 aa14.46□□□□□ -0.1
HMGB1-202ENST00000339872 PROZP22891 400 aa14.46□□□□□ -0.1
HMGB1-202ENST00000339872 BEX3Q00994 111 aa14.46□□□□□ -0.1
HMGB1-202ENST00000339872 EEF1DP3Q658K8 133 aa14.46□□□□□ -0.1
HMGB1-202ENST00000339872 ALKBH5Q6P6C2 394 aaKnown RBP14.46□□□□□ -0.1
HMGB1-202ENST00000339872 LRRN4CLQ8ND94 238 aa14.46□□□□□ -0.1
HMGB1-202ENST00000339872 HELQQ8TDG4 1101 aa14.46□□□□□ -0.1
HMGB1-202ENST00000339872 KAT2BQ92831 832 aa14.46□□□□□ -0.1
HMGB1-202ENST00000339872 ERO1AQ96HE7 468 aa14.46□□□□□ -0.1
HMGB1-202ENST00000339872 MYH10P35580 1976 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 DDX3XO00571 662 aaKnown RBP eCLIP14.45□□□□□ -0.19e-10■■□□□ 13.2
HMGB1-202ENST00000339872 ENC1O14682 589 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 ZEB2O60315 1214 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 AOC2O75106 756 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 TACC1O75410 805 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 IGHA2P01877 340 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 HLA-DRAP01903 254 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 MYL3P08590 195 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 LACTBP83111 547 aaPredicted RBP14.45□□□□□ -0.1
HMGB1-202ENST00000339872 MFSD10Q14728 455 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 NAB2Q15742 525 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 C10orf76Q5T2E6 689 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 NFRKBQ6P4R8 1299 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 IFNLR1Q8IU57 520 aaPredicted RBP14.45□□□□□ -0.1
HMGB1-202ENST00000339872 GLYCTKQ8IVS8 523 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 THNSL1Q8IYQ7 743 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 MNS1Q8NEH6 495 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms