RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ESRRAP11474 423 aaPredicted RBP6.79□□□□□ -1.32
VPS35-201ENST00000299138 SERPINB1P30740 379 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 ADCY8P40145 1251 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 ROR2Q01974 943 aaKnown RBP6.79□□□□□ -1.32
VPS35-201ENST00000299138 KLC1Q07866 573 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 TAF12Q16514 161 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 CCDC142Q17RM4 750 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 TMEM119Q4V9L6 283 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 KRT26Q7Z3Y9 468 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 ZNF677Q86XU0 584 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 MED15Q96RN5 788 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 RIOK1Q9BRS2 568 aaKnown RBP6.79□□□□□ -1.32
VPS35-201ENST00000299138 GREM2Q9H772 168 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 PANK4Q9NVE7 773 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 MCM9Q9NXL9 1143 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 LRCH1Q9Y2L9 728 aa6.79□□□□□ -1.32
VPS35-201ENST00000299138 A0A087WWV3 80 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 ATP6V1G2O95670 118 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 FESP07332 822 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 TFAP4Q01664 338 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 SPARCL1Q14515 664 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 CYTH1Q15438 398 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.78□□□□□ -1.32
VPS35-201ENST00000299138 MYLK4Q86YV6 388 aaPredicted RBP6.78□□□□□ -1.32
VPS35-201ENST00000299138 CCDC117Q8IWD4 279 aaPredicted RBP6.78□□□□□ -1.32
VPS35-201ENST00000299138 RSAD2Q8WXG1 361 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 WDR11Q9BZH6 1224 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 RAD21L1Q9H4I0 556 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 HDAC6Q9UBN7 1215 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 DKK3Q9UBP4 350 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 NAGPAQ9UK23 515 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 ALADP13716 330 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 RASA1P20936 1047 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 MAGOHP61326 146 aaKnown RBP6.78□□□□□ -1.32
VPS35-201ENST00000299138 MYO1EQ12965 1108 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 BLMHQ13867 455 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 C11orf88Q6PI97 169 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 HORMAD1Q86X24 394 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 CASKIN2Q8WXE0 1202 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 MAGOHBQ96A72 148 aaKnown RBP6.78□□□□□ -1.32
VPS35-201ENST00000299138 NAF1Q96HR8 494 aaKnown RBP6.78□□□□□ -1.32
VPS35-201ENST00000299138 UBE2OQ9C0C9 1292 aaKnown RBP6.78□□□□□ -1.32
VPS35-201ENST00000299138 MAPK8IP1Q9UQF2 711 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 CCDC22O60826 627 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 DLGAP3O95886 979 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 KRT6AP02538 564 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 KRT6BP04259 564 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 KRT6CP48668 564 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 VCPP55072 806 aaKnown RBP6.78□□□□□ -1.32
VPS35-201ENST00000299138 C4orf50Q6ZRC1 276 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 PCGF5Q86SE9 256 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 C4orf32Q8N8J7 132 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 MAGEB18Q96M61 343 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 PARVBQ9HBI1 364 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 SLC24A2Q9UI40 661 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 GTF3C4Q9UKN8 822 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 A8MXQ7 604 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.78□□□□□ -1.32
VPS35-201ENST00000299138 RAD51CO43502 376 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 E2F6O75461 281 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 MTA2O94776 668 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 MAP4P27816 1152 aaKnown RBP6.78□□□□□ -1.32
VPS35-201ENST00000299138 SLC1A4P43007 532 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 MIIPQ5JXC2 388 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 LMBRD2Q68DH5 695 aaPredicted RBP6.78□□□□□ -1.32
VPS35-201ENST00000299138 PIGWQ7Z7B1 504 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 SKA2Q8WVK7 121 aaPredicted RBP6.78□□□□□ -1.32
VPS35-201ENST00000299138 DCP1AQ9NPI6 582 aaPredicted RBP6.78□□□□□ -1.32
VPS35-201ENST00000299138 DCDC2Q9UHG0 476 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 PCDHA6Q9UN73 950 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 SLC12A4Q9UP95 1085 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 PCDHA8Q9Y5H6 950 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 AFF2P51816 1311 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 FANCGO15287 622 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 IFNB1P01574 187 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 DRD4P21917 467 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 NR2F2P24468 414 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 STX3Q13277 289 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 PPP6R3Q5H9R7 873 aaPredicted RBP6.78□□□□□ -1.32
VPS35-201ENST00000299138 FBXW10Q5XX13 1052 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 KIAA0825Q8IV33 1275 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 TAGAPQ8N103 731 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 TTC13Q8NBP0 860 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 CATSPER1Q8NEC5 780 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 MAF1Q9H063 256 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 EHD2Q9NZN4 543 aa6.78□□□□□ -1.32
VPS35-201ENST00000299138 ZC3H11AO75152 810 aaKnown RBP eCLIP6.77□□□□□ -1.32
VPS35-201ENST00000299138 ZMYND10O75800 440 aa6.77□□□□□ -1.32
VPS35-201ENST00000299138 MAP3K10Q02779 954 aa6.77□□□□□ -1.32
VPS35-201ENST00000299138 ILF2Q12905 390 aaKnown RBP6.77□□□□□ -1.32
VPS35-201ENST00000299138 BFSP2Q13515 415 aa6.77□□□□□ -1.32
VPS35-201ENST00000299138 SLC10A5Q5PT55 438 aa6.77□□□□□ -1.32
VPS35-201ENST00000299138 RELL1Q8IUW5 271 aa6.77□□□□□ -1.32
VPS35-201ENST00000299138 BTN2A2Q8WVV5 523 aa6.77□□□□□ -1.32
VPS35-201ENST00000299138 ATP6V1E2Q96A05 226 aa6.77□□□□□ -1.32
VPS35-201ENST00000299138 MTRQ99707 1265 aa6.77□□□□□ -1.32
VPS35-201ENST00000299138 C10orf88Q9H8K7 445 aa6.77□□□□□ -1.32
VPS35-201ENST00000299138 SOX13Q9UN79 622 aa6.77□□□□□ -1.32
VPS35-201ENST00000299138 RSPH10B2B2RC85 870 aa6.77□□□□□ -1.33
VPS35-201ENST00000299138 PDE2AO00408 941 aaPredicted RBP6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms