RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 DEFB129Q9H1M3 183 aa16.34■□□□□ 0.21
SHH-201ENST00000297261 RNF181Q9P0P0 153 aa16.34■□□□□ 0.21
SHH-201ENST00000297261 GOLGA8RI6L899 631 aa16.33■□□□□ 0.21
SHH-201ENST00000297261 STK10O94804 968 aaKnown RBP16.33■□□□□ 0.21
SHH-201ENST00000297261 KRT17Q04695 432 aa16.33■□□□□ 0.21
SHH-201ENST00000297261 KRT80Q6KB66 452 aa16.33■□□□□ 0.21
SHH-201ENST00000297261 RFX6Q8HWS3 928 aa16.33■□□□□ 0.21
SHH-201ENST00000297261 FUKQ8N0W3 1084 aa16.33■□□□□ 0.21
SHH-201ENST00000297261 C4orf33Q8N1A6 199 aa16.33■□□□□ 0.21
SHH-201ENST00000297261 TRIML2Q8N7C3 387 aa16.33■□□□□ 0.21
SHH-201ENST00000297261 VTI1AQ96AJ9 217 aa16.33■□□□□ 0.21
SHH-201ENST00000297261 RPAP3Q9H6T3 665 aaPredicted RBP16.33■□□□□ 0.21
SHH-201ENST00000297261 NDE1Q9NXR1 346 aa16.33■□□□□ 0.21
SHH-201ENST00000297261 IVNS1ABPQ9Y6Y0 642 aa16.33■□□□□ 0.21
SHH-201ENST00000297261 A0A1W2PQJ5 194 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 PRLRP16471 622 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 SERPINB4P48594 390 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 HMGCS2P54868 508 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 SNRNP48Q6IEG0 339 aaKnown RBP16.33■□□□□ 0.2
SHH-201ENST00000297261 TEKT4Q8WW24 435 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 C7orf25Q9BPX7 421 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 NUP85Q9BW27 656 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 PACSIN1Q9BY11 444 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 THEGQ9P2T0 379 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 UBOX5O94941 541 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 KCNA3P22001 575 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 SARSP49591 514 aaKnown RBP16.33■□□□□ 0.2
SHH-201ENST00000297261 COPS2P61201 443 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 TGFB2P61812 414 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 SEMA3FQ13275 785 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 TTI2Q6NXR4 508 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 AENQ8WTP8 325 aaKnown RBP16.33■□□□□ 0.2
SHH-201ENST00000297261 RNF146Q9NTX7 359 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 NPHP3-ACAD11A0A0J9YXS1 232 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 NVLO15381 856 aaKnown RBP16.33■□□□□ 0.2
SHH-201ENST00000297261 NQO1P15559 274 aaKnown RBP16.33■□□□□ 0.2
SHH-201ENST00000297261 PMS1P54277 932 aaKnown RBP16.33■□□□□ 0.2
SHH-201ENST00000297261 KIF22Q14807 665 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 DNAAF5Q86Y56 855 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 CALR3Q96L12 384 aaKnown RBP16.33■□□□□ 0.2
SHH-201ENST00000297261 TRAIPQ9BWF2 469 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 MRPL47Q9HD33 250 aaKnown RBP16.33■□□□□ 0.2
SHH-201ENST00000297261 RGL1Q9NZL6 768 aa16.33■□□□□ 0.2
SHH-201ENST00000297261 A0A087X0B3 334 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 TAL1P17542 331 aaPredicted RBP16.32■□□□□ 0.2
SHH-201ENST00000297261 PIK3CAP42336 1068 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 MTMR1Q13613 665 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 NAALADL2Q58DX5 795 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 RGS9BPQ6ZS82 235 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 CDH16O75309 829 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 CAP2P40123 477 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 PRELPP51888 382 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 FKBP1AP62942 108 aaKnown RBP16.32■□□□□ 0.2
SHH-201ENST00000297261 MKRN3Q13064 507 aaKnown RBP16.32■□□□□ 0.2
SHH-201ENST00000297261 MMEL1Q495T6 779 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 ANKRD20A8PQ5CZ79 823 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 NME8Q8N427 588 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 CYP4F11Q9HBI6 524 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 CHORDC1Q9UHD1 332 aaPredicted RBP16.32■□□□□ 0.2
SHH-201ENST00000297261 TCHHQ07283 1943 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 RPS6KA5O75582 802 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 ZWINTO95229 277 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 ESRRGP62508 458 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 MRPS35P82673 323 aaKnown RBP16.32■□□□□ 0.2
SHH-201ENST00000297261 CEP55Q53EZ4 464 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 RABGAP1LQ5R372 815 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 AGGF1Q8N302 714 aaeCLIP16.32■□□□□ 0.2
SHH-201ENST00000297261 CAVIN3Q969G5 261 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 NPHS2Q9NP85 383 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 GINS2Q9Y248 185 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 TOGARAM1Q9Y4F4 1720 aa16.32■□□□□ 0.2
SHH-201ENST00000297261 IPO5O00410 1097 aaKnown RBP16.31■□□□□ 0.2
SHH-201ENST00000297261 HOXA7P31268 230 aaPredicted RBP16.31■□□□□ 0.2
SHH-201ENST00000297261 PGM1P36871 562 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 ZBED8Q8IZ13 594 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 CNPY4Q8N129 248 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 DEPTORQ8TB45 409 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 TRIM11Q96F44 468 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 ACCSQ96QU6 501 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 ANKFY1Q9P2R3 1169 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 HACL1Q9UJ83 578 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 COPEO14579 308 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 CCND2P30279 289 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 SOX5P35711 763 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 NR1H3Q13133 447 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 DNAJC3Q13217 504 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 DMP1Q13316 513 aaPredicted RBP16.31■□□□□ 0.2
SHH-201ENST00000297261 BRDTQ58F21 947 aaPredicted RBP16.31■□□□□ 0.2
SHH-201ENST00000297261 IZUMO3Q5VZ72 239 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 CREG2Q8IUH2 290 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 EIF2AK1Q9BQI3 630 aaKnown RBP16.31■□□□□ 0.2
SHH-201ENST00000297261 TRABDQ9H4I3 376 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 SMYD2Q9NRG4 433 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 GGA3Q9NZ52 723 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 CRCPO75575 148 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 FSBPO95073 299 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 ATP6V1G2O95670 118 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 POLR2BP30876 1174 aaKnown RBP16.31■□□□□ 0.2
SHH-201ENST00000297261 CRLF3Q8IUI8 442 aa16.31■□□□□ 0.2
SHH-201ENST00000297261 SLC26A7Q8TE54 656 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms