RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 SPICE1Q8N0Z3 855 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 FSD1LQ9BXM9 530 aa10.44□□□□□ -0.74
COL6A3-201ENST00000295550 ANP32DO95626 131 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 SFR1Q86XK3 245 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 BRD8Q9H0E9 1235 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 DYTNA2CJ06 578 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 PP2D1A8MPX8 630 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 CCND2P30279 289 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 DCAF15Q66K64 600 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 SRBD1Q8N5C6 995 aaKnown RBP10.43□□□□□ -0.74
COL6A3-201ENST00000295550 KMT5AQ9NQR1 393 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 RGPD8O14715 1765 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-201ENST00000295550 KCNH2Q12809 1159 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 PTPAQ15257 358 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 KNOP1Q1ED39 458 aaKnown RBP10.43□□□□□ -0.74
COL6A3-201ENST00000295550 CNTNAP5Q8WYK1 1306 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 NCK2O43639 380 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 ALDH18A1P54886 795 aaKnown RBP10.43□□□□□ -0.74
COL6A3-201ENST00000295550 FRMD5Q7Z6J6 570 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 COA1Q9GZY4 146 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 EPC1Q9H2F5 836 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 STK32BQ9NY57 414 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 NARFQ9UHQ1 456 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 CAB39Q9Y376 341 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-201ENST00000295550 GDF11O95390 407 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 PRDX5P30044 214 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 PPHLN1Q8NEY8 458 aaKnown RBP10.43□□□□□ -0.74
COL6A3-201ENST00000295550 CEP95Q96GE4 821 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 SEL1LQ9UBV2 794 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 KDM6AO15550 1401 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-201ENST00000295550 FCER1AP12319 257 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 RWDD4Q6NW29 188 aaKnown RBP10.43□□□□□ -0.74
COL6A3-201ENST00000295550 LRIG3Q6UXM1 1119 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 HDDC2Q7Z4H3 204 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 TEX2Q8IWB9 1127 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 TTC8Q8TAM2 541 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 DNAJC7Q99615 494 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 BHMT2Q9H2M3 363 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 HSPA1AP0DMV8 641 aaKnown RBP10.43□□□□□ -0.74
COL6A3-201ENST00000295550 HSPA1BP0DMV9 641 aaKnown RBP10.43□□□□□ -0.74
COL6A3-201ENST00000295550 TMEM179Q6ZVK1 233 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 LUZP2Q86TE4 346 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 GIMAP8Q8ND71 665 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-201ENST00000295550 PBXIP1Q96AQ6 731 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 AGBL1Q96MI9 1066 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 ZNF263O14978 683 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 JAK3P52333 1124 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 MKRN3Q13064 507 aaKnown RBP10.43□□□□□ -0.74
COL6A3-201ENST00000295550 DOK7Q18PE1 504 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 FBXW10Q5XX13 1052 aa10.43□□□□□ -0.74
COL6A3-201ENST00000295550 CCDC78A2IDD5 438 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 H2AFXP16104 143 aaPredicted RBP10.42□□□□□ -0.74
COL6A3-201ENST00000295550 CHRNA3P32297 505 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 TBL3Q12788 808 aaKnown RBP10.42□□□□□ -0.74
COL6A3-201ENST00000295550 ZNF34Q8IZ26 560 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 SH3GL1Q99961 368 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 BLOC1S6Q9UL45 172 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 GSNP06396 782 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 SPATA4Q8NEY3 305 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 SCG3Q8WXD2 468 aaKnown RBP10.42□□□□□ -0.74
COL6A3-201ENST00000295550 APOL6Q9BWW8 343 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 SLC5A4Q9NY91 659 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 HPSEQ9Y251 543 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 FAM205CA6NFA0 338 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 DLGAP3O95886 979 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 ZNF18P17022 549 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 CC2D2BQ6DHV5 1058 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 DCCP43146 1447 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 GPS1Q13098 491 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 DAB2IPQ5VWQ8 1189 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 ANKRD40Q6AI12 368 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 SRLQ86TD4 932 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 NSUN4Q96CB9 384 aaKnown RBP10.42□□□□□ -0.74
COL6A3-201ENST00000295550 AGXT2Q9BYV1 514 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 KNL1Q8NG31 2342 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.42□□□□□ -0.74
COL6A3-201ENST00000295550 RP1L1Q8IWN7 2480 aaPredicted RBP10.42□□□□□ -0.74
COL6A3-201ENST00000295550 PFASO15067 1338 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 SALL1Q9NSC2 1324 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 HORMAD1Q86X24 394 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 PHF21AQ96BD5 680 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 CYFIP2Q96F07 1278 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 ZCCHC17Q9NP64 241 aaKnown RBP10.42□□□□□ -0.74
COL6A3-201ENST00000295550 TCP10L2B9ZVM9 353 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 ADCY3O60266 1144 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 GGPS1O95749 300 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 IMPDH2P12268 514 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 ARL8AQ96BM9 186 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 NUP85Q9BW27 656 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 TRIM45Q9H8W5 580 aaPredicted RBP10.42□□□□□ -0.74
COL6A3-201ENST00000295550 KCND1Q9NSA2 647 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 ELF1P32519 619 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 PAPOLAP51003 745 aaKnown RBP10.42□□□□□ -0.74
COL6A3-201ENST00000295550 TBC1D10BQ4KMP7 808 aaPredicted RBP10.42□□□□□ -0.74
COL6A3-201ENST00000295550 AARS2Q5JTZ9 985 aaKnown RBP10.42□□□□□ -0.74
COL6A3-201ENST00000295550 MIS18BP1Q6P0N0 1132 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 NLGN1Q8N2Q7 840 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 PPP1R3GB7ZBB8 358 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 SBK1Q52WX2 424 aa10.42□□□□□ -0.74
COL6A3-201ENST00000295550 CNKSR1Q969H4 720 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms