RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 TOM1L1O75674 476 aa16.52■□□□□ 0.24
SF3B4-201ENST00000271628 TNNI1P19237 187 aa16.52■□□□□ 0.24
SF3B4-201ENST00000271628 MCM3P25205 808 aa16.52■□□□□ 0.24
SF3B4-201ENST00000271628 HUNKP57058 714 aa16.52■□□□□ 0.24
SF3B4-201ENST00000271628 MAPK6Q16659 721 aa16.52■□□□□ 0.24
SF3B4-201ENST00000271628 TMEM63BQ5T3F8 832 aa16.52■□□□□ 0.24
SF3B4-201ENST00000271628 SYT11Q9BT88 431 aa16.52■□□□□ 0.24
SF3B4-201ENST00000271628 PACSIN1Q9BY11 444 aa16.52■□□□□ 0.24
SF3B4-201ENST00000271628 KATNBL1Q9H079 304 aa16.52■□□□□ 0.24
SF3B4-201ENST00000271628 ZCCHC17Q9NP64 241 aaKnown RBP16.52■□□□□ 0.24
SF3B4-201ENST00000271628 PSD3Q9NYI0 1048 aa16.52■□□□□ 0.24
SF3B4-201ENST00000271628 SUCLA2Q9P2R7 463 aaPredicted RBP16.52■□□□□ 0.24
SF3B4-201ENST00000271628 HYOU1Q9Y4L1 999 aa16.52■□□□□ 0.24
SF3B4-201ENST00000271628 ADGRA2Q96PE1 1338 aa16.52■□□□□ 0.24
SF3B4-201ENST00000271628 SLC15A5A6NIM6 579 aa16.52■□□□□ 0.23
SF3B4-201ENST00000271628 PPFIA4O75335 1185 aa16.52■□□□□ 0.23
SF3B4-201ENST00000271628 SNAI1O95863 264 aaPredicted RBP16.52■□□□□ 0.23
SF3B4-201ENST00000271628 RHOXF2BP0C7M4 288 aa16.52■□□□□ 0.23
SF3B4-201ENST00000271628 SRGAP2CP0DJJ0 459 aa16.52■□□□□ 0.23
SF3B4-201ENST00000271628 ACOT2P49753 483 aa16.52■□□□□ 0.23
SF3B4-201ENST00000271628 NLRP11P59045 1033 aaKnown RBP16.52■□□□□ 0.23
SF3B4-201ENST00000271628 MKRN4PQ13434 485 aaPredicted RBP16.52■□□□□ 0.23
SF3B4-201ENST00000271628 C15orf39Q6ZRI6 1047 aa16.52■□□□□ 0.23
SF3B4-201ENST00000271628 GLYCTKQ8IVS8 523 aa16.52■□□□□ 0.23
SF3B4-201ENST00000271628 RNF149Q8NC42 400 aa16.52■□□□□ 0.23
SF3B4-201ENST00000271628 TAS1R2Q8TE23 839 aa16.52■□□□□ 0.23
SF3B4-201ENST00000271628 U2AF1L4Q8WU68 220 aaKnown RBP16.52■□□□□ 0.23
SF3B4-201ENST00000271628 LMBR1Q8WVP7 490 aa16.52■□□□□ 0.23
SF3B4-201ENST00000271628 SEMA4DQ92854 862 aa16.52■□□□□ 0.23
SF3B4-201ENST00000271628 AGPAT1Q99943 283 aa16.52■□□□□ 0.23
SF3B4-201ENST00000271628 RHOXF2Q9BQY4 288 aa16.52■□□□□ 0.23
SF3B4-201ENST00000271628 TINF2Q9BSI4 451 aa16.52■□□□□ 0.23
SF3B4-201ENST00000271628 CCDC113Q9H0I3 377 aa16.52■□□□□ 0.23
SF3B4-201ENST00000271628 ABCB6Q9NP58 842 aa16.52■□□□□ 0.23
SF3B4-201ENST00000271628 RBAKQ9NYW8 714 aaPredicted RBP16.52■□□□□ 0.23
SF3B4-201ENST00000271628 ANKFY1Q9P2R3 1169 aa16.52■□□□□ 0.23
SF3B4-201ENST00000271628 ERICH4A6NGS2 130 aa16.51■□□□□ 0.23
SF3B4-201ENST00000271628 MAGEB2O15479 319 aa16.51■□□□□ 0.23
SF3B4-201ENST00000271628 SRGAP2O75044 1071 aa16.51■□□□□ 0.23
SF3B4-201ENST00000271628 PALMO75781 387 aa16.51■□□□□ 0.23
SF3B4-201ENST00000271628 LGALS2P05162 132 aa16.51■□□□□ 0.23
SF3B4-201ENST00000271628 PRPF4BQ13523 1007 aaKnown RBP16.51■□□□□ 0.23
SF3B4-201ENST00000271628 EFCAB12Q6NXP0 572 aa16.51■□□□□ 0.23
SF3B4-201ENST00000271628 CRELD2Q6UXH1 353 aaPredicted RBP16.51■□□□□ 0.23
SF3B4-201ENST00000271628 FAM71AQ8IYT1 594 aa16.51■□□□□ 0.23
SF3B4-201ENST00000271628 LRRC71Q8N4P6 559 aa16.51■□□□□ 0.23
SF3B4-201ENST00000271628 LNX1Q8TBB1 728 aaPredicted RBP16.51■□□□□ 0.23
SF3B4-201ENST00000271628 EXOC4Q96A65 974 aa16.51■□□□□ 0.23
SF3B4-201ENST00000271628 ZBTB45Q96K62 511 aaPredicted RBP16.51■□□□□ 0.23
SF3B4-201ENST00000271628 HAPLN2Q9GZV7 340 aa16.51■□□□□ 0.23
SF3B4-201ENST00000271628 RNPEPQ9H4A4 650 aa16.51■□□□□ 0.23
SF3B4-201ENST00000271628 MANSC4A6NHS7 340 aaPredicted RBP16.5■□□□□ 0.23
SF3B4-201ENST00000271628 ITGBL1O95965 494 aaPredicted RBP16.5■□□□□ 0.23
SF3B4-201ENST00000271628 ADCYAP1R1P41586 468 aa16.5■□□□□ 0.23
SF3B4-201ENST00000271628 VSNL1P62760 191 aa16.5■□□□□ 0.23
SF3B4-201ENST00000271628 GCNT1Q02742 428 aa16.5■□□□□ 0.23
SF3B4-201ENST00000271628 POU5F1BQ06416 359 aa16.5■□□□□ 0.23
SF3B4-201ENST00000271628 ZACNQ401N2 412 aa16.5■□□□□ 0.23
SF3B4-201ENST00000271628 WDR44Q5JSH3 913 aa16.5■□□□□ 0.23
SF3B4-201ENST00000271628 IQSEC1Q6DN90 963 aa16.5■□□□□ 0.23
SF3B4-201ENST00000271628 RHPN2Q8IUC4 686 aa16.5■□□□□ 0.23
SF3B4-201ENST00000271628 HELQQ8TDG4 1101 aa16.5■□□□□ 0.23
SF3B4-201ENST00000271628 SHC3Q92529 594 aa16.5■□□□□ 0.23
SF3B4-201ENST00000271628 TOPORSQ9NS56 1045 aaPredicted RBP16.5■□□□□ 0.23
SF3B4-201ENST00000271628 PRKCBP05771 671 aa16.5■□□□□ 0.23
SF3B4-201ENST00000271628 NOP2P46087 812 aaKnown RBP16.5■□□□□ 0.23
SF3B4-201ENST00000271628 AP3M2P53677 418 aa16.5■□□□□ 0.23
SF3B4-201ENST00000271628 IRF5Q13568 498 aa16.5■□□□□ 0.23
SF3B4-201ENST00000271628 ACVR2BQ13705 512 aa16.5■□□□□ 0.23
SF3B4-201ENST00000271628 DUSP28Q4G0W2 176 aa16.5■□□□□ 0.23
SF3B4-201ENST00000271628 OSBPL9Q96SU4 736 aa16.5■□□□□ 0.23
SF3B4-201ENST00000271628 ACO2Q99798 780 aaKnown RBP16.5■□□□□ 0.23
SF3B4-201ENST00000271628 TCHPQ9BT92 498 aa16.5■□□□□ 0.23
SF3B4-201ENST00000271628 NFKBIZQ9BYH8 718 aa16.5■□□□□ 0.23
SF3B4-201ENST00000271628 ACBD3Q9H3P7 528 aa16.5■□□□□ 0.23
SF3B4-201ENST00000271628 RNF14Q9UBS8 474 aa16.5■□□□□ 0.23
SF3B4-201ENST00000271628 COL1A2P08123 1366 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 C4BPAP04003 597 aaKnown RBP16.49■□□□□ 0.23
SF3B4-201ENST00000271628 TMEM253P0C7T8 217 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 INSRRP14616 1297 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 ZNF157P51786 506 aaPredicted RBP16.49■□□□□ 0.23
SF3B4-201ENST00000271628 GRM1Q13255 1194 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 CHADLQ6NUI6 762 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 METTL13Q8N6R0 699 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 NOA1Q8NC60 698 aaKnown RBP16.49■□□□□ 0.23
SF3B4-201ENST00000271628 CAGE1Q8TC20 777 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 AFG1LQ8WV93 481 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 ZNF516Q92618 1163 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 CALR3Q96L12 384 aaKnown RBP16.49■□□□□ 0.23
SF3B4-201ENST00000271628 KREMEN1Q96MU8 473 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 TLR10Q9BXR5 811 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 ADAM21Q9UKJ8 722 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 TRPM7Q96QT4 1865 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 ACKR2O00590 384 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 TFRCP02786 760 aaKnown RBP16.49■□□□□ 0.23
SF3B4-201ENST00000271628 EDN1P05305 212 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 TMOD1P28289 359 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 USP8P40818 1118 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 GALCP54803 685 aa16.49■□□□□ 0.23
SF3B4-201ENST00000271628 SURF1Q15526 300 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms