RNA–Protein interactions for RNA: ENST00000265619.6

VAPB-201, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,596 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-201ENST00000265619 CES2O00748 559 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 PGM3O95394 542 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 MARK3P27448 753 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 PCSK6P29122 969 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 STX2P32856 288 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 TXKP42681 527 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 OXCT1P55809 520 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 PTENP60484 403 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 CTC1Q2NKJ3 1217 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 SLC10A5Q5PT55 438 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 MARK2Q7KZI7 788 aaKnown RBP9.36□□□□□ -0.91
VAPB-201ENST00000265619 DYMQ7RTS9 669 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 IQCDQ96DY2 449 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 CRNKL1Q9BZJ0 848 aaKnown RBP9.36□□□□□ -0.91
VAPB-201ENST00000265619 RANBP17Q9H2T7 1088 aaKnown RBP9.36□□□□□ -0.91
VAPB-201ENST00000265619 PFDN4Q9NQP4 134 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 EFR3BQ9Y2G0 817 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 PCDHA3Q9Y5H8 950 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 BCORQ6W2J9 1755 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 SPAG7O75391 227 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 CDK4P11802 303 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 CHRNB2P17787 502 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 PTGIRP43119 386 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 FBXO27Q8NI29 283 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 INPP5DQ92835 1189 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 CD209Q9NNX6 404 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 AAASQ9NRG9 546 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 FRMD4BQ9Y2L6 1034 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 PTPN22Q9Y2R2 807 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 ANKRD36CQ5JPF3 1778 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 BRWD3Q6RI45 1802 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 TNKSO95271 1327 aa9.36□□□□□ -0.91
VAPB-201ENST00000265619 BICDL2A1A5D9 508 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 H0YIN7 160 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 TP73O15350 636 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 DDX3YO15523 660 aaKnown RBP9.35□□□□□ -0.91
VAPB-201ENST00000265619 GNAT2P19087 354 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 HOXD12P35452 270 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 CHKAP35790 457 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 MARCKSL1P49006 195 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 VPS41P49754 854 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 GSTM4Q03013 218 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 ACVR2BQ13705 512 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 PAOXQ6QHF9 649 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 OLFML1Q6UWY5 402 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 PHLDB2Q86SQ0 1253 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 MTDHQ86UE4 582 aaKnown RBP9.35□□□□□ -0.91
VAPB-201ENST00000265619 SRRM1Q8IYB3 904 aaKnown RBP9.35□□□□□ -0.91
VAPB-201ENST00000265619 SRBD1Q8N5C6 995 aaKnown RBP9.35□□□□□ -0.91
VAPB-201ENST00000265619 ZNF384Q8TF68 577 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 ALG3Q92685 438 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 GPKOWQ92917 476 aaPredicted RBP eCLIP9.35□□□□□ -0.91
VAPB-201ENST00000265619 NSUN4Q96CB9 384 aaKnown RBP9.35□□□□□ -0.91
VAPB-201ENST00000265619 ARL8BQ9NVJ2 186 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 KANSL3Q9P2N6 904 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 ARMCX3Q9UH62 379 aaPredicted RBP9.35□□□□□ -0.91
VAPB-201ENST00000265619 PCDHGB4Q9UN71 923 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 PCDHGB5Q9Y5G0 923 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 PNPLA7Q6ZV29 1317 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 PASKQ96RG2 1323 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 VILLO15195 856 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 BTDP43251 543 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 KCNJ1P48048 391 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 YARSP54577 528 aaKnown RBP9.35□□□□□ -0.91
VAPB-201ENST00000265619 ADARP55265 1226 aaKnown RBP9.35□□□□□ -0.91
VAPB-201ENST00000265619 SEC23AQ15436 765 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 LRRC36Q1X8D7 754 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 CFAP157Q5JU67 520 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 SYDE2Q5VT97 1194 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 IRF2BP2Q7Z5L9 587 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 C14orf80Q86SX3 495 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 ZNF554Q86TJ5 538 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 HES6Q96HZ4 224 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 MKNK1Q9BUB5 465 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 CDC42EP4Q9H3Q1 356 aaKnown RBP9.35□□□□□ -0.91
VAPB-201ENST00000265619 PCDH18Q9HCL0 1135 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 UBAP1Q9NZ09 502 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 PHTF1Q9UMS5 762 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 COL1A1P02452 1464 aaPredicted RBP9.35□□□□□ -0.91
VAPB-201ENST00000265619 C2orf71A6NGG8 1288 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 MARCH6O60337 910 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 KRT13P13646 458 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 LONP1P36776 959 aaKnown RBP9.35□□□□□ -0.91
VAPB-201ENST00000265619 PHEXP78562 749 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 THOC5Q13769 683 aaKnown RBP9.35□□□□□ -0.91
VAPB-201ENST00000265619 RRP1BQ14684 758 aaKnown RBP9.35□□□□□ -0.91
VAPB-201ENST00000265619 TAOK1Q7L7X3 1001 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 TRIM50Q86XT4 487 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 CPNE8Q86YQ8 564 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 TREML1Q86YW5 311 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 RBM46Q8TBY0 533 aaKnown RBP9.35□□□□□ -0.91
VAPB-201ENST00000265619 ERLEC1Q96DZ1 483 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 CYTH2Q99418 400 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 TLE6Q9H808 572 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 VAT1LQ9HCJ6 419 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 DDX43Q9NXZ2 648 aaKnown RBP9.35□□□□□ -0.91
VAPB-201ENST00000265619 NAGPAQ9UK23 515 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 PCDHAC2Q9Y5I4 1007 aa9.35□□□□□ -0.91
VAPB-201ENST00000265619 UBA7P41226 1012 aa9.34□□□□□ -0.91
VAPB-201ENST00000265619 CCR3P51677 355 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms