RNA–Protein interactions for RNA: ENSMUST00000035935.8

Ccdc40-201, Transcript of Coiled-coil domain-containing protein 40, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ccdc40, Length 4,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40-201ENSMUST00000035935 Ccdc194A0A140LIT1 234 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Itpripl1A2ASA8 547 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 StrnO55106 780 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Ap1g2O88512 791 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 CraddO88843 199 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Depdc1aQ8CIG0 804 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Trpm8Q8R4D5 1104 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 MlphQ91V27 590 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Gm36028A0A0U1RPM1 299 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Gm4307E9PZY4 289 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Gm4312K9J7E2 289 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Hspa8P63017 646 aaKnown RBP10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Pfdn4Q3UWL8 134 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Cfap52Q5F201 620 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Map3k7Q62073 579 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Fbxo41Q6NS60 873 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Nudt16Q6P3D0 195 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Dusp19Q8K4T5 220 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Eif3hQ91WK2 352 aaKnown RBP10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Sytl1Q99N80 567 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Ttc33Q9D6K7 262 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Cpsf3Q9QXK7 684 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Nr1h3Q9Z0Y9 445 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Kcnn2P58390 839 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Nfe2Q07279 373 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Adat2Q6P6J0 191 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Prr18Q6PAN7 307 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Cyfip1Q7TMB8 1253 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Prkag3Q8BGM7 489 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Snapc2Q91XA5 359 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Wdr64Q9D565 1086 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 CtsfQ9R013 462 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Ubr1O70481 1757 aa10.91□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Ripor3A1L3T7 938 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Pdzrn4E9PUZ9 1014 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Vmn2r87E9PZX4 848 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Myl1P05977 188 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Prr7Q3V0I2 269 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 BC051142Q3V0M8 400 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 PRAG1Q571I4 1179 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Oca2Q62052 833 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Fam102aQ78T81 392 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Fam49aQ8BHZ0 323 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Ppfia2Q8BSS9 1257 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 GanQ8CA72 597 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Nkiras1Q8CEC5 192 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Syne4Q8CII8 388 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 E2f4Q8R0K9 410 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Cox16Q9CR63 106 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Pard6bQ9JK83 371 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Cyp39a1Q9JKJ9 470 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 GgcxQ9QYC7 757 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 PfasQ5SUR0 1337 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Ttc17E9PVB5 1198 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 PrkceP16054 737 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Thumpd3P97770 505 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Hsph1Q61699 858 aaKnown RBP10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Trappc12Q8K2L8 797 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Sh3bp5lQ99LH9 392 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Scgb2b11A0A087WR49 112 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Zscan4-ps3A0A1B0GRH6 506 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Zscan4-ps2A0A1C7CYU6 506 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Mcf2A2AEU1 1111 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Vmn2r121A2BE32 847 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Meis3P97368 378 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Lrrc1Q80VQ1 524 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Llgl1Q80Y17 1036 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Vmn1r191Q8K4D0 298 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 OtoaQ8K561 1137 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Slc25a38Q91XD8 326 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Pcdhgc5Q91XW9 944 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Vta1Q9CR26 309 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Scgb2b20Q9JI02 112 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Morc1Q9WVL5 950 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Gm28036V9GXJ1 658 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Zfp626A0A0U1RQ84 676 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Apba1B2RUJ5 842 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 HpdP49429 393 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 SftpbP50405 377 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Map4k1P70218 827 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Mex3cQ05A36 652 aaKnown RBP10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Brd9Q3UQU0 596 aaKnown RBP10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Krt35Q497I4 455 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Trappc3lQ4KL14 181 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Tfdp2Q64163 446 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Bank1Q80VH0 783 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Ric8bQ80XE1 520 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Oxnad1Q8VE38 311 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Rpn1Q91YQ5 608 aaKnown RBP10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Catsper1Q91ZR5 686 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 DtnaQ9D2N4 746 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Rassf7Q9DD19 359 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Serpinb6cW4VSP4 379 aa10.9□□□□□ -0.66
Ccdc40-201ENSMUST00000035935 Btbd18A0A0A6YY25 723 aa10.89□□□□□ -0.67
Ccdc40-201ENSMUST00000035935 Gm5737A0A140LI11 423 aa10.89□□□□□ -0.67
Ccdc40-201ENSMUST00000035935 PorP37040 678 aa10.89□□□□□ -0.67
Ccdc40-201ENSMUST00000035935 CebpaP53566 359 aa10.89□□□□□ -0.67
Ccdc40-201ENSMUST00000035935 Rhox12Q4TU81 186 aa10.89□□□□□ -0.67
Ccdc40-201ENSMUST00000035935 Klra5Q60652 266 aa10.89□□□□□ -0.67
Ccdc40-201ENSMUST00000035935 Lilrb4Q64281 335 aa10.89□□□□□ -0.67
Retrieved 100 of 22,080 RNA–protein pairs in 31.8 ms