RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 TUBBP07437 444 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 ACOT2P49753 483 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 RPS6KA1Q15418 735 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 CFAP221Q4G0U5 840 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 LMBRD2Q68DH5 695 aaPredicted RBP16.9■□□□□ 0.3
CLN3-251ENST00000636853 FBXL13Q8NEE6 735 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 AFAP1L1Q8TED9 768 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 GLG1Q92896 1179 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 ZBTB9Q96C00 473 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 LRRC1Q9BTT6 524 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 RAB20Q9NX57 234 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 TARSL2A2RTX5 802 aaKnown RBP16.9■□□□□ 0.3
CLN3-251ENST00000636853 EXTL3O43909 919 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 EDN1P05305 212 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 GPC3P51654 580 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 WNT7BP56706 349 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 NLRP11P59045 1033 aaKnown RBP16.9■□□□□ 0.3
CLN3-251ENST00000636853 ERVK-9P63128 1117 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 ITIH3Q06033 890 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 LDLRAD1Q5T700 205 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 RPUSD2Q8IZ73 545 aaKnown RBP16.9■□□□□ 0.3
CLN3-251ENST00000636853 SLC35G2Q8TBE7 412 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 HELQQ8TDG4 1101 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 HDAC7Q8WUI4 952 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 ARHGEF26Q96DR7 871 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 SLC10A4Q96EP9 437 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 MPHOSPH6Q99547 160 aaKnown RBP16.9■□□□□ 0.3
CLN3-251ENST00000636853 GPR20Q99678 358 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 PI4K2AQ9BTU6 479 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 AZI2Q9H6S1 392 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 EFCC1Q9HA90 598 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 RBM12Q9NTZ6 932 aaKnown RBP16.9■□□□□ 0.3
CLN3-251ENST00000636853 KCNG1Q9UIX4 513 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 L1RE1Q9UN81 338 aa16.9■□□□□ 0.3
CLN3-251ENST00000636853 KCNK3O14649 394 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 CYP26A1O43174 497 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 KIF4AO95239 1232 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 TMEM253P0C7T8 217 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 POTEJP0CG39 1038 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 RFC5P40937 340 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 SNAPC2Q13487 334 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 CELF3Q5SZQ8 465 aaKnown RBP16.89■□□□□ 0.29
CLN3-251ENST00000636853 USP37Q86T82 979 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 FAM71AQ8IYT1 594 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 CTNNBL1Q8WYA6 563 aaPredicted RBP16.89■□□□□ 0.29
CLN3-251ENST00000636853 ZNF516Q92618 1163 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 COPS5Q92905 334 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 TATDN2Q93075 761 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 VTI1AQ96AJ9 217 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 TARS2Q9BW92 718 aaKnown RBP16.89■□□□□ 0.29
CLN3-251ENST00000636853 THAP2Q9H0W7 228 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 AGO2Q9UKV8 859 aaKnown RBP16.89■□□□□ 0.29
CLN3-251ENST00000636853 NOP56O00567 594 aaKnown RBP16.89■□□□□ 0.29
CLN3-251ENST00000636853 GTF2H1P32780 548 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 ABCD1P33897 745 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 COPB2P35606 906 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 MFAP3P55082 362 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 SLC7A5Q01650 507 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 PRPF4BQ13523 1007 aaKnown RBP16.89■□□□□ 0.29
CLN3-251ENST00000636853 CAPSQ13938 189 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.89■□□□□ 0.29
CLN3-251ENST00000636853 DAAM2Q86T65 1068 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 SLC47A2Q86VL8 602 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 TAF4BQ92750 862 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 NT5C1BQ96P26 610 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 MROH8Q9H579 483 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 ANKFY1Q9P2R3 1169 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 CLEC11AQ9Y240 323 aa16.89■□□□□ 0.29
CLN3-251ENST00000636853 MAP2K7O14733 419 aa16.88■□□□□ 0.29
CLN3-251ENST00000636853 CYP2C19P33261 490 aa16.88■□□□□ 0.29
CLN3-251ENST00000636853 MKRN3Q13064 507 aaKnown RBP16.88■□□□□ 0.29
CLN3-251ENST00000636853 ZBTB41Q5SVQ8 909 aa16.88■□□□□ 0.29
CLN3-251ENST00000636853 HDXQ7Z353 690 aa16.88■□□□□ 0.29
CLN3-251ENST00000636853 NOP9Q86U38 636 aaKnown RBP16.88■□□□□ 0.29
CLN3-251ENST00000636853 GSPT2Q8IYD1 628 aaKnown RBP16.88■□□□□ 0.29
CLN3-251ENST00000636853 EPS8L1Q8TE68 723 aa16.88■□□□□ 0.29
CLN3-251ENST00000636853 PRPF31Q8WWY3 499 aaKnown RBP16.88■□□□□ 0.29
CLN3-251ENST00000636853 PSPC1Q8WXF1 523 aaKnown RBP16.88■□□□□ 0.29
CLN3-251ENST00000636853 RFFLQ8WZ73 363 aa16.88■□□□□ 0.29
CLN3-251ENST00000636853 SHC3Q92529 594 aa16.88■□□□□ 0.29
CLN3-251ENST00000636853 PDGFCQ9NRA1 345 aa16.88■□□□□ 0.29
CLN3-251ENST00000636853 TMEM51Q9NW97 253 aa16.88■□□□□ 0.29
CLN3-251ENST00000636853 RNF14Q9UBS8 474 aa16.88■□□□□ 0.29
CLN3-251ENST00000636853 STYXL1Q9Y6J8 313 aa16.88■□□□□ 0.29
CLN3-251ENST00000636853 SIP14410 1827 aa16.88■□□□□ 0.29
CLN3-251ENST00000636853 MAFO75444 373 aaPredicted RBP16.87■□□□□ 0.29
CLN3-251ENST00000636853 CHRNB2P17787 502 aa16.87■□□□□ 0.29
CLN3-251ENST00000636853 CCDC70Q6NSX1 233 aa16.87■□□□□ 0.29
CLN3-251ENST00000636853 CRELD2Q6UXH1 353 aaPredicted RBP16.87■□□□□ 0.29
CLN3-251ENST00000636853 PEX26Q7Z412 305 aa16.87■□□□□ 0.29
CLN3-251ENST00000636853 SLFN11Q7Z7L1 901 aa16.87■□□□□ 0.29
CLN3-251ENST00000636853 DHX37Q8IY37 1157 aaKnown RBP16.87■□□□□ 0.29
CLN3-251ENST00000636853 LMBR1Q8WVP7 490 aa16.87■□□□□ 0.29
CLN3-251ENST00000636853 DHX38Q92620 1227 aaKnown RBP16.87■□□□□ 0.29
CLN3-251ENST00000636853 SPATA33Q96N06 139 aa16.87■□□□□ 0.29
CLN3-251ENST00000636853 PCDHB18PQ96TA0 734 aa16.87■□□□□ 0.29
CLN3-251ENST00000636853 PDE11AQ9HCR9 933 aa16.87■□□□□ 0.29
CLN3-251ENST00000636853 DMGDHQ9UI17 866 aaKnown RBP16.87■□□□□ 0.29
CLN3-251ENST00000636853 NCANO14594 1321 aa16.87■□□□□ 0.29
CLN3-251ENST00000636853 BUB1BO60566 1050 aaPredicted RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms