RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 VPS72Q15906 364 aa7.02□□□□□ -1.29
VPS29-212ENST00000621131 DOK3Q7L591 496 aa7.02□□□□□ -1.29
VPS29-212ENST00000621131 GPRIN1Q7Z2K8 1008 aa7.02□□□□□ -1.29
VPS29-212ENST00000621131 STRA8Q7Z7C7 330 aa7.02□□□□□ -1.29
VPS29-212ENST00000621131 ZNF276Q8N554 614 aa7.02□□□□□ -1.29
VPS29-212ENST00000621131 LILRA3Q8N6C8 439 aaPredicted RBP7.02□□□□□ -1.29
VPS29-212ENST00000621131 GLB1L3Q8NCI6 653 aaPredicted RBP7.02□□□□□ -1.29
VPS29-212ENST00000621131 LENG9Q96B70 501 aa7.02□□□□□ -1.29
VPS29-212ENST00000621131 EPC1Q9H2F5 836 aa7.02□□□□□ -1.29
VPS29-212ENST00000621131 KCTD10Q9H3F6 313 aa7.02□□□□□ -1.29
VPS29-212ENST00000621131 IFT22Q9H7X7 185 aa7.02□□□□□ -1.29
VPS29-212ENST00000621131 TNIKQ9UKE5 1360 aa7.02□□□□□ -1.29
VPS29-212ENST00000621131 HECW2Q9P2P5 1572 aa7.02□□□□□ -1.29
VPS29-212ENST00000621131 RUSC2Q8N2Y8 1516 aa7.01□□□□□ -1.29
VPS29-212ENST00000621131 A0A087X1B8 175 aa7.01□□□□□ -1.29
VPS29-212ENST00000621131 PTGS2P35354 604 aa7.01□□□□□ -1.29
VPS29-212ENST00000621131 LGALS4P56470 323 aa7.01□□□□□ -1.29
VPS29-212ENST00000621131 PCSK4Q6UW60 755 aa7.01□□□□□ -1.29
VPS29-212ENST00000621131 CLRN3Q8NCR9 226 aa7.01□□□□□ -1.29
VPS29-212ENST00000621131 SNX33Q8WV41 574 aa7.01□□□□□ -1.29
VPS29-212ENST00000621131 EAF2Q96CJ1 260 aaPredicted RBP7.01□□□□□ -1.29
VPS29-212ENST00000621131 TTC1Q99614 292 aa7.01□□□□□ -1.29
VPS29-212ENST00000621131 PRRX2Q99811 253 aa7.01□□□□□ -1.29
VPS29-212ENST00000621131 FZD1Q9UP38 647 aa7.01□□□□□ -1.29
VPS29-212ENST00000621131 SORCS3Q9UPU3 1222 aa7.01□□□□□ -1.29
VPS29-212ENST00000621131 CUL7Q14999 1698 aa7□□□□□ -1.29
VPS29-212ENST00000621131 POLA1P09884 1462 aaPredicted RBP7□□□□□ -1.29
VPS29-212ENST00000621131 RAD54L2Q9Y4B4 1467 aa7□□□□□ -1.29
VPS29-212ENST00000621131 ULK1O75385 1050 aa7□□□□□ -1.29
VPS29-212ENST00000621131 GYPEP15421 78 aa7□□□□□ -1.29
VPS29-212ENST00000621131 SESN3P58005 492 aa7□□□□□ -1.29
VPS29-212ENST00000621131 MEF2AQ02078 507 aaPredicted RBP7□□□□□ -1.29
VPS29-212ENST00000621131 CSRP2Q16527 193 aa7□□□□□ -1.29
VPS29-212ENST00000621131 FSCN1Q16658 493 aaKnown RBP7□□□□□ -1.29
VPS29-212ENST00000621131 XYLT1Q86Y38 959 aa7□□□□□ -1.29
VPS29-212ENST00000621131 RPUSD2Q8IZ73 545 aaKnown RBP7□□□□□ -1.29
VPS29-212ENST00000621131 UBR7Q8N806 425 aa7□□□□□ -1.29
VPS29-212ENST00000621131 WDR97A6NE52 1622 aa7□□□□□ -1.29
VPS29-212ENST00000621131 ABCA10Q8WWZ4 1543 aa7□□□□□ -1.29
VPS29-212ENST00000621131 ZMYM3Q14202 1370 aa6.99□□□□□ -1.29
VPS29-212ENST00000621131 AHRRA9YTQ3 701 aa6.99□□□□□ -1.29
VPS29-212ENST00000621131 OVOL3O00110 214 aa6.99□□□□□ -1.29
VPS29-212ENST00000621131 TRIM24O15164 1050 aa6.99□□□□□ -1.29
VPS29-212ENST00000621131 CTSSP25774 331 aa6.99□□□□□ -1.29
VPS29-212ENST00000621131 ZFP36P26651 326 aaKnown RBP6.99□□□□□ -1.29
VPS29-212ENST00000621131 APBA1Q02410 837 aa6.99□□□□□ -1.29
VPS29-212ENST00000621131 STRN3Q13033 797 aa6.99□□□□□ -1.29
VPS29-212ENST00000621131 UGT8Q16880 541 aa6.99□□□□□ -1.29
VPS29-212ENST00000621131 GIMAP6Q6P9H5 292 aa6.99□□□□□ -1.29
VPS29-212ENST00000621131 MRGPRGQ86SM5 289 aa6.99□□□□□ -1.29
VPS29-212ENST00000621131 CPT1CQ8TCG5 803 aa6.99□□□□□ -1.29
VPS29-212ENST00000621131 NDC1Q9BTX1 674 aa6.99□□□□□ -1.29
VPS29-212ENST00000621131 CEP162Q5TB80 1403 aa6.99□□□□□ -1.29
VPS29-212ENST00000621131 GAPVD1Q14C86 1478 aa6.98□□□□□ -1.29
VPS29-212ENST00000621131 FOXN1O15353 648 aa6.98□□□□□ -1.29
VPS29-212ENST00000621131 PRAMEF4O60810 478 aa6.98□□□□□ -1.29
VPS29-212ENST00000621131 HSD3B2P26439 372 aa6.98□□□□□ -1.29
VPS29-212ENST00000621131 TAF7LQ5H9L4 462 aa6.98□□□□□ -1.29
VPS29-212ENST00000621131 KCNH6Q9H252 994 aa6.98□□□□□ -1.29
VPS29-212ENST00000621131 ZNF768Q9H5H4 540 aaKnown RBP6.98□□□□□ -1.29
VPS29-212ENST00000621131 CAAP1Q9H8G2 361 aa6.98□□□□□ -1.29
VPS29-212ENST00000621131 C11orf21Q9P2W6 132 aa6.98□□□□□ -1.29
VPS29-212ENST00000621131 HDAC5Q9UQL6 1122 aa6.98□□□□□ -1.29
VPS29-212ENST00000621131 DMRT1Q9Y5R6 373 aa6.98□□□□□ -1.29
VPS29-212ENST00000621131 RECQL4O94761 1208 aa6.97□□□□□ -1.29
VPS29-212ENST00000621131 SCAF4O95104 1147 aaKnown RBP6.97□□□□□ -1.29
VPS29-212ENST00000621131 ITGB1P05556 798 aa6.97□□□□□ -1.29
VPS29-212ENST00000621131 ENPP1P22413 925 aa6.97□□□□□ -1.29
VPS29-212ENST00000621131 ANKS6Q68DC2 871 aa6.97□□□□□ -1.29
VPS29-212ENST00000621131 HDGFL2Q7Z4V5 671 aaPredicted RBP6.97□□□□□ -1.29
VPS29-212ENST00000621131 CMIPQ8IY22 773 aa6.97□□□□□ -1.29
VPS29-212ENST00000621131 ACAP3Q96P50 834 aa6.97□□□□□ -1.29
VPS29-212ENST00000621131 AGAP2Q99490 1192 aa6.97□□□□□ -1.29
VPS29-212ENST00000621131 MLST8Q9BVC4 326 aa6.97□□□□□ -1.29
VPS29-212ENST00000621131 GPRC5DQ9NZD1 345 aa6.97□□□□□ -1.29
VPS29-212ENST00000621131 USP35Q9P2H5 1018 aa6.97□□□□□ -1.29
VPS29-212ENST00000621131 EDARQ9UNE0 448 aa6.97□□□□□ -1.29
VPS29-212ENST00000621131 APOBEC2Q9Y235 224 aaKnown RBP6.97□□□□□ -1.29
VPS29-212ENST00000621131 HS3ST4Q9Y661 456 aa6.97□□□□□ -1.29
VPS29-212ENST00000621131 PRXQ9BXM0 1461 aa6.97□□□□□ -1.29
VPS29-212ENST00000621131 COL4A3Q01955 1670 aa6.96□□□□□ -1.29
VPS29-212ENST00000621131 ITGA10O75578 1167 aa6.96□□□□□ -1.3
VPS29-212ENST00000621131 GASTP01350 101 aa6.96□□□□□ -1.3
VPS29-212ENST00000621131 HSP90B1P14625 803 aaKnown RBP6.96□□□□□ -1.3
VPS29-212ENST00000621131 APOBEC3AP31941 199 aaPredicted RBP6.96□□□□□ -1.3
VPS29-212ENST00000621131 MASP1P48740 699 aa6.96□□□□□ -1.3
VPS29-212ENST00000621131 IQSEC1Q6DN90 963 aa6.96□□□□□ -1.3
VPS29-212ENST00000621131 LAIR1Q6GTX8 287 aa6.96□□□□□ -1.3
VPS29-212ENST00000621131 CDC5LQ99459 802 aaKnown RBP6.96□□□□□ -1.3
VPS29-212ENST00000621131 TTPALQ9BTX7 342 aa6.96□□□□□ -1.3
VPS29-212ENST00000621131 CLCA2Q9UQC9 943 aa6.96□□□□□ -1.3
VPS29-212ENST00000621131 TARBP1Q13395 1621 aaKnown RBP6.96□□□□□ -1.3
VPS29-212ENST00000621131 RAPGEF2Q9Y4G8 1499 aa6.96□□□□□ -1.3
VPS29-212ENST00000621131 ABCA5Q8WWZ7 1642 aa6.95□□□□□ -1.3
VPS29-212ENST00000621131 TMEM191CA6NGB0 347 aa6.95□□□□□ -1.3
VPS29-212ENST00000621131 TBKBP1A7MCY6 615 aa6.95□□□□□ -1.3
VPS29-212ENST00000621131 PRR5-ARHGAP8B1AHC4 643 aa6.95□□□□□ -1.3
VPS29-212ENST00000621131 LEFTY2O00292 366 aa6.95□□□□□ -1.3
VPS29-212ENST00000621131 RAMP2O60895 175 aa6.95□□□□□ -1.3
VPS29-212ENST00000621131 INHBEP58166 350 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms