RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 STARD13Q9Y3M8 1113 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 PASKQ96RG2 1323 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 UPP2O95045 317 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 BRAFP15056 766 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 IL9RQ01113 521 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 PPATQ06203 517 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 MGAT5Q09328 741 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 UBL4BQ8N7F7 174 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 ANKRD42Q8N9B4 389 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 ATL2Q8NHH9 583 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 SLC35G2Q8TBE7 412 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 SNX29Q8TEQ0 813 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 U2AF1L4Q8WU68 220 aaKnown RBP11.59□□□□□ -0.55
UPF3A-212ENST00000619079 ERP27Q96DN0 273 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 MTMR9Q96QG7 549 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 MYLK2Q9H1R3 596 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 ERVK-5Q9HDB9 667 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 ZBTB12Q9Y330 459 aaPredicted RBP11.59□□□□□ -0.55
UPF3A-212ENST00000619079 ACTL7BQ9Y614 415 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 PFASO15067 1338 aa11.59□□□□□ -0.55
UPF3A-212ENST00000619079 MAGEA13PA6NCF6 341 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 DDX3XO00571 662 aaKnown RBP eCLIP11.58□□□□□ -0.56
UPF3A-212ENST00000619079 DDNO94850 711 aaPredicted RBP11.58□□□□□ -0.56
UPF3A-212ENST00000619079 PYGLP06737 847 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 IMPDH2P12268 514 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 VCAM1P19320 739 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 RANBP1P43487 201 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 CCDC6Q16204 474 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 SBK1Q52WX2 424 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 MFSD14BQ5SR56 506 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 STRIP1Q5VSL9 837 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 RNF220Q5VTB9 566 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 SLC17A8Q8NDX2 589 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 GLIS3Q8NEA6 775 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 UHMK1Q8TAS1 419 aaKnown RBP11.58□□□□□ -0.56
UPF3A-212ENST00000619079 DNAJC19Q96DA6 116 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 MXD3Q9BW11 206 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 CRNKL1Q9BZJ0 848 aaKnown RBP11.58□□□□□ -0.56
UPF3A-212ENST00000619079 LARSQ9P2J5 1176 aaKnown RBP11.58□□□□□ -0.56
UPF3A-212ENST00000619079 MAD2L2Q9UI95 211 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 PPP1R9AQ9ULJ8 1098 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 BAZ2AQ9UIF9 1905 aaKnown RBP11.58□□□□□ -0.56
UPF3A-212ENST00000619079 TCEA3O75764 348 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 CTNNA2P26232 953 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 PON1P27169 355 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 JAM2P57087 298 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 RRP1BQ14684 758 aaKnown RBP11.58□□□□□ -0.56
UPF3A-212ENST00000619079 KPNB1Q14974 876 aaKnown RBP11.58□□□□□ -0.56
UPF3A-212ENST00000619079 GSTA3Q16772 222 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 CGB2Q6NT52 195 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 DPY19L2P1Q6NXN4 242 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 OTUD6AQ7L8S5 288 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 LONP2Q86WA8 852 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 ANKLE1Q8NAG6 615 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 GDAP1Q8TB36 358 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 TBCKQ8TEA7 893 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 C18orf8Q96DM3 657 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 GBP5Q96PP8 586 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 TBC1D10AQ9BXI6 508 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 NMRK1Q9NWW6 199 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 MTUS1Q9ULD2 1270 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 ADGRA3Q8IWK6 1321 aa11.58□□□□□ -0.56
UPF3A-212ENST00000619079 SMCO2A6NFE2 343 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 ACTN1P12814 892 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 XRCC5P13010 732 aaKnown RBP11.57□□□□□ -0.56
UPF3A-212ENST00000619079 ALAS1P13196 640 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 SLC9A1P19634 815 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 MARK3P27448 753 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 STAT1P42224 750 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 DYNLL1P63167 89 aaKnown RBP11.57□□□□□ -0.56
UPF3A-212ENST00000619079 LONRF1Q17RB8 773 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 ZNF568Q3ZCX4 644 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 ADAT2Q7Z6V5 191 aaKnown RBP11.57□□□□□ -0.56
UPF3A-212ENST00000619079 GPC2Q8N158 579 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 RBM46Q8TBY0 533 aaKnown RBP11.57□□□□□ -0.56
UPF3A-212ENST00000619079 WDR66Q8TBY9 1149 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 BORCS6Q96GS4 357 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 KCTD10Q9H3F6 313 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 TLE6Q9H808 572 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 PCDHA3Q9Y5H8 950 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 SLC4A7Q9Y6M7 1214 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 LAMB1P07942 1786 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 GTPBP10A4D1E9 387 aaKnown RBP11.57□□□□□ -0.56
UPF3A-212ENST00000619079 GM2AP17900 193 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 NR2F2P24468 414 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 RCN2Q14257 317 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 RSBN1LQ6PCB5 846 aaPredicted RBP11.57□□□□□ -0.56
UPF3A-212ENST00000619079 CCDC137Q6PK04 289 aaKnown RBP11.57□□□□□ -0.56
UPF3A-212ENST00000619079 TRIM74Q86UV6 250 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 TRIM73Q86UV7 250 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 KIAA0825Q8IV33 1275 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 RHOT2Q8IXI1 618 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 REXO1Q8N1G1 1221 aaKnown RBP11.57□□□□□ -0.56
UPF3A-212ENST00000619079 PRELID2Q8N945 189 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 PPFIBP2Q8ND30 876 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 SLC30A5Q8TAD4 765 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 PTPRN2Q92932 1015 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 OPTNQ96CV9 577 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 NT5C3AQ9H0P0 336 aa11.57□□□□□ -0.56
UPF3A-212ENST00000619079 CDC42EP4Q9H3Q1 356 aaKnown RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms