RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 RDM1Q8NG50 284 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 PCDHB18PQ96TA0 734 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 ST6GALNAC4Q9H4F1 302 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 AMFRQ9UKV5 643 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 SYNGAP1Q96PV0 1343 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 OATP04181 439 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 FAM153BP0C7A2 387 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 GGCXP38435 758 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 LMAN1P49257 510 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 NLRP11P59045 1033 aaKnown RBP13.39□□□□□ -0.27
CIITA-212ENST00000618207 PPARDQ03181 441 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 FAM153CQ494X1 144 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 NOL9Q5SY16 702 aaKnown RBP13.39□□□□□ -0.27
CIITA-212ENST00000618207 NT5DC3Q86UY8 548 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 DDX42Q86XP3 938 aaKnown RBP eCLIP13.39□□□□□ -0.27
CIITA-212ENST00000618207 C12orf56Q8IXR9 622 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 FBXL13Q8NEE6 735 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 DEPTORQ8TB45 409 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 SLC7A3Q8WY07 619 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 RFFLQ8WZ73 363 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 GLG1Q92896 1179 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 FAM212AQ96EL1 285 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 SENP7Q9BQF6 1050 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 TIPINQ9BVW5 301 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 RAB20Q9NX57 234 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 FAM153AQ9UHL3 310 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 NENFQ9UMX5 172 aa13.39□□□□□ -0.27
CIITA-212ENST00000618207 NOC2LQ9Y3T9 749 aaKnown RBP13.39□□□□□ -0.27
CIITA-212ENST00000618207 LCTP09848 1927 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 K7ERI5 159 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 DKC1O60832 514 aaKnown RBP eCLIP13.38□□□□□ -0.27
CIITA-212ENST00000618207 CYP24A1Q07973 514 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 STRN3Q13033 797 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 HLTFQ14527 1009 aaKnown RBP eCLIP13.38□□□□□ -0.27
CIITA-212ENST00000618207 MESDQ14696 234 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 CHST13Q8NET6 341 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 FNBP1Q96RU3 617 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 TRIM31Q9BZY9 425 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 PPP2R3BQ9Y5P8 575 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 TTLL13PA6NNM8 815 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 KRIT1O00522 736 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 SRGAP2CP0DJJ0 459 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 GLRA2P23416 452 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 TCF7P36402 384 aaPredicted RBP13.38□□□□□ -0.27
CIITA-212ENST00000618207 KIF22Q14807 665 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 SH3D19Q5HYK7 790 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 SCARA3Q6AZY7 606 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 CDR2LQ86X02 465 aaPredicted RBP13.38□□□□□ -0.27
CIITA-212ENST00000618207 LRRC71Q8N4P6 559 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 EPS8L1Q8TE68 723 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 LMBR1Q8WVP7 490 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 COPS5Q92905 334 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 NT5C1BQ96P26 610 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 SYT11Q9BT88 431 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 TCHPQ9BT92 498 aa13.38□□□□□ -0.27
CIITA-212ENST00000618207 GSTTP1A0A1W2PQM5 241 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 ZNF233A6NK53 670 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 ARIH2O95376 493 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 FGGP02679 453 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 EDN1P05305 212 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 TMEM253P0C7T8 217 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 IREB2P48200 963 aaKnown RBP13.37□□□□□ -0.27
CIITA-212ENST00000618207 STAT5BP51692 787 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 SKIDA1Q1XH10 827 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 HSDL1Q3SXM5 330 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 C9orf131Q5VYM1 1079 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 ZBTB33Q86T24 672 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 TSEN2Q8NCE0 465 aaKnown RBP13.37□□□□□ -0.27
CIITA-212ENST00000618207 ZNF516Q92618 1163 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 PPP1R16BQ96T49 567 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 PCYT2Q99447 389 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 NTPCRQ9BSD7 190 aaKnown RBP13.37□□□□□ -0.27
CIITA-212ENST00000618207 CELF4Q9BZC1 486 aaKnown RBP13.37□□□□□ -0.27
CIITA-212ENST00000618207 TMEM8AQ9HCN3 771 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 PDLIM7Q9NR12 457 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 FBXO40Q9UH90 709 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 AMACRQ9UHK6 382 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 NR2E1Q9Y466 385 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 NFASCO94856 1347 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 ANKRD62A6NC57 917 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 BTNL10A8MVZ5 291 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 FARP2O94887 1054 aaPredicted RBP13.37□□□□□ -0.27
CIITA-212ENST00000618207 GJB1P08034 283 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 MFAP3P55082 362 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 ZNF572Q7Z3I7 529 aaPredicted RBP13.37□□□□□ -0.27
CIITA-212ENST00000618207 DNERQ8NFT8 737 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 TRAPPC12Q8WVT3 735 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 SPIRE2Q8WWL2 714 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 HAPLN2Q9GZV7 340 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 ARHGAP28Q9P2N2 729 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 PTPRFP10586 1907 aa13.37□□□□□ -0.27
CIITA-212ENST00000618207 RNF40O75150 1001 aa13.36□□□□□ -0.27
CIITA-212ENST00000618207 CHRNB2P17787 502 aa13.36□□□□□ -0.27
CIITA-212ENST00000618207 MARCKSL1P49006 195 aa13.36□□□□□ -0.27
CIITA-212ENST00000618207 ITIH3Q06033 890 aa13.36□□□□□ -0.27
CIITA-212ENST00000618207 MKRN4PQ13434 485 aaPredicted RBP13.36□□□□□ -0.27
CIITA-212ENST00000618207 BRDTQ58F21 947 aaPredicted RBP13.36□□□□□ -0.27
CIITA-212ENST00000618207 GJC2Q5T442 439 aaPredicted RBP13.36□□□□□ -0.27
CIITA-212ENST00000618207 LLGL2Q6P1M3 1020 aa13.36□□□□□ -0.27
CIITA-212ENST00000618207 FBXO16Q8IX29 292 aaPredicted RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms