RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 TYW1BQ6NUM6 668 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 PROM2Q8N271 834 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 BLZF1Q9H2G9 400 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 SH2D4AQ9H788 454 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 DDX43Q9NXZ2 648 aaKnown RBP10.93□□□□□ -0.66
VPS39-214ENST00000614932 SRCAPQ6ZRS2 3230 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 RAD51CO43502 376 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 ENTPD5O75356 428 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 STK10O94804 968 aaKnown RBP10.93□□□□□ -0.66
VPS39-214ENST00000614932 SCG2P13521 617 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 SPA17Q15506 151 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 NPY5RQ15761 445 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 LRRC74BQ6ZQY2 392 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 HEATR3Q7Z4Q2 680 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 TMCO5AQ8N6Q1 288 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 NRG4Q8WWG1 115 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 GAB3Q8WWW8 586 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 INPP5DQ92835 1189 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 DYDC2Q96IM9 177 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 TPK1Q9H3S4 243 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 MLXIPQ9HAP2 919 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 A0A1B0GUL6 1792 aa10.93□□□□□ -0.66
VPS39-214ENST00000614932 FAM205AQ6ZU69 1335 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 MAP3K7O43318 606 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 NCK2O43639 380 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 OXSR1O95747 527 aaPredicted RBP10.92□□□□□ -0.66
VPS39-214ENST00000614932 ERVK-9P63128 1117 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 TNNC1P63316 161 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 TTC38Q5R3I4 469 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 KLHL35Q6PF15 583 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 CCDC174Q6PII3 467 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 USP17L2Q6R6M4 530 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 ARHGAP27Q6ZUM4 889 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 ZNF184Q99676 751 aaPredicted RBP10.92□□□□□ -0.66
VPS39-214ENST00000614932 RTFDC1Q9BY42 306 aaPredicted RBP10.92□□□□□ -0.66
VPS39-214ENST00000614932 DENND2DQ9H6A0 471 aaPredicted RBP10.92□□□□□ -0.66
VPS39-214ENST00000614932 SRPRBQ9Y5M8 271 aaKnown RBP10.92□□□□□ -0.66
VPS39-214ENST00000614932 MYH10P35580 1976 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 GRID2IPA4D2P6 1211 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 SMIM23A6NLE4 172 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 MATN2O00339 956 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 TTI1O43156 1089 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 FGRP09769 529 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 CPA3P15088 417 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 IFNAR2P48551 515 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 AP1B1Q10567 949 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 SLC35G1Q2M3R5 365 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 WDR72Q3MJ13 1102 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 B3GNT6Q6ZMB0 384 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 FAM47EQ6ZV65 393 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 TLR10Q9BXR5 811 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 PRKAG3Q9UGI9 489 aa10.92□□□□□ -0.66
VPS39-214ENST00000614932 DDAH1O94760 285 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 TMED10P49755 219 aaKnown RBP10.91□□□□□ -0.66
VPS39-214ENST00000614932 RELAQ04206 551 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 TXNRD1Q16881 649 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 HS2ST1Q7LGA3 356 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 KRT27Q7Z3Y8 459 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 LRRC49Q8IUZ0 686 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.91□□□□□ -0.66
VPS39-214ENST00000614932 KCNQ5Q9NR82 932 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 PP2D1A8MPX8 630 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 CYTH3O43739 400 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 CBFA2T3O75081 653 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 CALM1P0DP23 149 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 CALM2P0DP24 149 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 CALM3P0DP25 149 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 COL6A2P12110 1019 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 SLC34A1Q06495 639 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 RNF43Q68DV7 783 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 UIMC1Q96RL1 719 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 TMEM47Q9BQJ4 181 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 GBA3Q9H227 469 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 EPB41L1Q9H4G0 881 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 FGFR1OP2Q9NVK5 253 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 CLIC5Q9NZA1 410 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 NID2Q14112 1375 aa10.91□□□□□ -0.66
VPS39-214ENST00000614932 FRMPD2Q68DX3 1309 aaPredicted RBP10.91□□□□□ -0.66
VPS39-214ENST00000614932 IQCA1LA6NCM1 817 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 PPP1R3GB7ZBB8 358 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 SPECC1L-ADORA2AF8WAN1 911 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 POLRMTO00411 1230 aaKnown RBP10.9□□□□□ -0.66
VPS39-214ENST00000614932 FBP2O00757 339 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 KCNA2P16389 499 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 PLCG2P16885 1265 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 CDK8P49336 464 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 CACNB3P54284 484 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 PTK7Q13308 1070 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 GIT2Q14161 759 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 SEPT7Q16181 437 aaKnown RBP10.9□□□□□ -0.66
VPS39-214ENST00000614932 FXNQ16595 210 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 SBK1Q52WX2 424 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 TCP11X2Q5H9J9 407 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 DEPDC1Q5TB30 811 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 Q6ZNX1 250 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 PATL1Q86TB9 770 aaKnown RBP10.9□□□□□ -0.66
VPS39-214ENST00000614932 ZBED8Q8IZ13 594 aa10.9□□□□□ -0.66
VPS39-214ENST00000614932 ZNF713Q8N859 430 aaPredicted RBP10.9□□□□□ -0.66
VPS39-214ENST00000614932 DGCR14Q96DF8 476 aaKnown RBP10.9□□□□□ -0.66
VPS39-214ENST00000614932 HSPBAP1Q96EW2 488 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms