RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 MRPL42Q9Y6G3 142 aaKnown RBP18.14■□□□□ 0.49
CCDC28A-202ENST00000611852 CHD7Q9P2D1 2997 aa18.14■□□□□ 0.49
CCDC28A-202ENST00000611852 HNRNPDLO14979 420 aaKnown RBP18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 KLRC4O43908 158 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 NR1I2O75469 434 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 PRR29P0C7W0 189 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 MYBP10242 640 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 AKAP5P24588 427 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 ALCAMQ13740 583 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 FAM26FQ5R3K3 315 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 KANK3Q6NY19 840 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 GLB1LQ6UWU2 654 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 APBB1IPQ7Z5R6 666 aaPredicted RBP18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 RSPH1Q8WYR4 309 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 C17orf80Q9BSJ5 609 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 TCHPQ9BT92 498 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 APOL6Q9BWW8 343 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 UBN1Q9NPG3 1134 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 PCDHB13Q9Y5F0 798 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 MYO9BQ13459 2157 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 PRPF40AO75400 957 aaKnown RBP18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 LIG4P49917 911 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 AFF1P51825 1210 aaKnown RBP18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 UBE2HP62256 183 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 KCNA1Q09470 495 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 DPYDQ12882 1025 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 GRIN2CQ14957 1233 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 L1TD1Q5T7N2 865 aaKnown RBP18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 SLC39A4Q6P5W5 647 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 LRRC55Q6ZSA7 311 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 ZBTB33Q86T24 672 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 LRRC43Q8N309 656 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 GLIS3Q8NEA6 775 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 TIGD1Q96MW7 591 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 TYW1Q9NV66 732 aaKnown RBP18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 ANKFY1Q9P2R3 1169 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 HCSTQ9UBK5 93 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 MTUS1Q9ULD2 1270 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 GIT1Q9Y2X7 761 aa18.13■□□□□ 0.49
CCDC28A-202ENST00000611852 NLRC5Q86WI3 1866 aa18.12■□□□□ 0.49
CCDC28A-202ENST00000611852 INPPL1O15357 1258 aa18.12■□□□□ 0.49
CCDC28A-202ENST00000611852 CLDN3O15551 220 aa18.12■□□□□ 0.49
CCDC28A-202ENST00000611852 MCF2P10911 925 aa18.12■□□□□ 0.49
CCDC28A-202ENST00000611852 MCL1Q07820 350 aa18.12■□□□□ 0.49
CCDC28A-202ENST00000611852 NOMO2Q5JPE7 1267 aa18.12■□□□□ 0.49
CCDC28A-202ENST00000611852 CEP120Q8N960 986 aa18.12■□□□□ 0.49
CCDC28A-202ENST00000611852 ARNTL2Q8WYA1 636 aa18.12■□□□□ 0.49
CCDC28A-202ENST00000611852 CCDC34Q96HJ3 373 aa18.12■□□□□ 0.49
CCDC28A-202ENST00000611852 GAD1Q99259 594 aa18.12■□□□□ 0.49
CCDC28A-202ENST00000611852 MRPL9Q9BYD2 267 aaKnown RBP18.12■□□□□ 0.49
CCDC28A-202ENST00000611852 HAPLN2Q9GZV7 340 aa18.12■□□□□ 0.49
CCDC28A-202ENST00000611852 CWH43Q9H720 699 aa18.12■□□□□ 0.49
CCDC28A-202ENST00000611852 SNTG2Q9NY99 539 aa18.12■□□□□ 0.49
CCDC28A-202ENST00000611852 INPP5FQ9Y2H2 1132 aa18.12■□□□□ 0.49
CCDC28A-202ENST00000611852 ARL5CA6NH57 179 aa18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 EPOPA6NHQ4 379 aa18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 RPN1P04843 607 aaKnown RBP18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 MLH1P40692 756 aa18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 NOLC1Q14978 699 aaKnown RBP eCLIP18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 POSTNQ15063 836 aa18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 KMT5BQ4FZB7 885 aa18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 EPC2Q52LR7 807 aa18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 EPM2AIP1Q7L775 607 aaPredicted RBP18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 TMEM192Q8IY95 271 aa18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 ZFP42Q96MM3 310 aa18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 SAMD11Q96NU1 681 aa18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 ACCSQ96QU6 501 aa18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 IKZF4Q9H2S9 585 aa18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 TBC1D13Q9NVG8 400 aa18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 MTMR10Q9NXD2 777 aa18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 PARP2Q9UGN5 583 aa18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 EXOC7Q9UPT5 735 aa18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 RWDD3Q9Y3V2 267 aa18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 RALGAPA2Q2PPJ7 1873 aa18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 KIAA1671Q9BY89 1806 aa18.11■□□□□ 0.49
CCDC28A-202ENST00000611852 ZMYM2Q9UBW7 1377 aa18.1■□□□□ 0.49
CCDC28A-202ENST00000611852 TISP43B9A030 160 aa18.1■□□□□ 0.49
CCDC28A-202ENST00000611852 ANKRD63C9JTQ0 380 aa18.1■□□□□ 0.49
CCDC28A-202ENST00000611852 RECQL4O94761 1208 aa18.1■□□□□ 0.49
CCDC28A-202ENST00000611852 PRPF6O94906 941 aaKnown RBP18.1■□□□□ 0.49
CCDC28A-202ENST00000611852 BMPR1AP36894 532 aa18.1■□□□□ 0.49
CCDC28A-202ENST00000611852 GRM5P41594 1212 aa18.1■□□□□ 0.49
CCDC28A-202ENST00000611852 STXBP4Q6ZWJ1 553 aa18.1■□□□□ 0.49
CCDC28A-202ENST00000611852 THNSL1Q8IYQ7 743 aa18.1■□□□□ 0.49
CCDC28A-202ENST00000611852 GSTCDQ8NEC7 633 aa18.1■□□□□ 0.49
CCDC28A-202ENST00000611852 URGCPQ8TCY9 931 aa18.1■□□□□ 0.49
CCDC28A-202ENST00000611852 GBP4Q96PP9 640 aa18.1■□□□□ 0.49
CCDC28A-202ENST00000611852 PRDM12Q9H4Q4 367 aa18.1■□□□□ 0.49
CCDC28A-202ENST00000611852 EXOC1Q9NV70 894 aa18.1■□□□□ 0.49
CCDC28A-202ENST00000611852 KLK14Q9P0G3 267 aa18.1■□□□□ 0.49
CCDC28A-202ENST00000611852 KANSL3Q9P2N6 904 aa18.1■□□□□ 0.49
CCDC28A-202ENST00000611852 GDAQ9Y2T3 454 aa18.1■□□□□ 0.49
CCDC28A-202ENST00000611852 STYXL1Q9Y6J8 313 aa18.1■□□□□ 0.49
CCDC28A-202ENST00000611852 A0A0B4J269 797 aa18.09■□□□□ 0.49
CCDC28A-202ENST00000611852 C5orf67F2Z3F1 127 aa18.09■□□□□ 0.49
CCDC28A-202ENST00000611852 EIF3DO15371 548 aaKnown RBP eCLIP18.09■□□□□ 0.49
CCDC28A-202ENST00000611852 POMCP01189 267 aa18.09■□□□□ 0.49
CCDC28A-202ENST00000611852 HARSP12081 509 aaKnown RBP18.09■□□□□ 0.49
CCDC28A-202ENST00000611852 CTNNB1P35222 781 aa18.09■□□□□ 0.49
CCDC28A-202ENST00000611852 MATR3P43243 847 aaKnown RBP eCLIP18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms