RNA–Protein interactions for RNA: ENST00000611848.1

SMAD4-217, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-217ENST00000611848 GSDMAQ96QA5 445 aa9.68□□□□□ -0.86
SMAD4-217ENST00000611848 TMEM134Q9H6X4 195 aa9.68□□□□□ -0.86
SMAD4-217ENST00000611848 PARVGQ9HBI0 331 aa9.68□□□□□ -0.86
SMAD4-217ENST00000611848 KMT5AQ9NQR1 393 aa9.68□□□□□ -0.86
SMAD4-217ENST00000611848 FANCLQ9NW38 375 aa9.68□□□□□ -0.86
SMAD4-217ENST00000611848 TMEM161AQ9NX61 479 aa9.68□□□□□ -0.86
SMAD4-217ENST00000611848 LRFN2Q9ULH4 789 aa9.68□□□□□ -0.86
SMAD4-217ENST00000611848 PCDHB7Q9Y5E2 793 aa9.68□□□□□ -0.86
SMAD4-217ENST00000611848 FNDC1Q4ZHG4 1894 aaPredicted RBP9.68□□□□□ -0.86
SMAD4-217ENST00000611848 LAMA2P24043 3122 aaKnown RBP9.68□□□□□ -0.86
SMAD4-217ENST00000611848 NPHP3-ACAD11A0A0J9YXS1 232 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 MYMKA6NI61 221 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 SFI1A8K8P3 1242 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 K7ERI5 159 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 TSPAN1O60635 241 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 ZNF623O75123 536 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 TBCAO75347 108 aaKnown RBP9.67□□□□□ -0.86
SMAD4-217ENST00000611848 EOMESO95936 686 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 PRKCBP05771 671 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 SKILP12757 684 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 HOXA11P31270 313 aaPredicted RBP9.67□□□□□ -0.86
SMAD4-217ENST00000611848 ABCD1P33897 745 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 UBASH3AP57075 661 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 AMHR2Q16671 573 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 DNTTIP2Q5QJE6 756 aaKnown RBP9.67□□□□□ -0.86
SMAD4-217ENST00000611848 ZNF697Q5TEC3 545 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 TMC6Q7Z403 805 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 ECHDC2Q86YB7 292 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 SLC17A8Q8NDX2 589 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 MYRIPQ8NFW9 859 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 DDX12PQ92771 950 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 KCNN1Q92952 543 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 MED15Q96RN5 788 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 YME1L1Q96TA2 773 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 CCDC113Q9H0I3 377 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 SLC28A3Q9HAS3 691 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 KBTBD4Q9NVX7 518 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 ARHGAP28Q9P2N2 729 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 YBX2Q9Y2T7 364 aaKnown RBP9.67□□□□□ -0.86
SMAD4-217ENST00000611848 ADGRA3Q8IWK6 1321 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 A0A1B0GUA9 196 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 HAX1O00165 279 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 HOXA2O43364 376 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 DGKIO75912 1065 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 CA3P07451 260 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 MYOGP15173 224 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 ARF4P18085 180 aaPredicted RBP9.67□□□□□ -0.86
SMAD4-217ENST00000611848 GTF2F1P35269 517 aaKnown RBP eCLIP9.67□□□□□ -0.86
SMAD4-217ENST00000611848 PRPF4BQ13523 1007 aaKnown RBP9.67□□□□□ -0.86
SMAD4-217ENST00000611848 ARMCX5Q6P1M9 558 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 DYMQ7RTS9 669 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 MYCT1Q8N699 235 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 RSPH1Q8WYR4 309 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 ZNF689Q96CS4 500 aaPredicted RBP9.67□□□□□ -0.86
SMAD4-217ENST00000611848 DNAJC19Q96DA6 116 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 KIFC3Q9BVG8 833 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 NKX2-4Q9H2Z4 354 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 RC3H2Q9HBD1 1191 aaKnown RBP9.67□□□□□ -0.86
SMAD4-217ENST00000611848 FAM105AQ9NUU6 356 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 SEL1LQ9UBV2 794 aa9.67□□□□□ -0.86
SMAD4-217ENST00000611848 CNTNAP2Q9UHC6 1331 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 SZT2Q5T011 3432 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 UQCRHLA0A096LP55 91 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 FRMD3A2A2Y4 597 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 DYNC1I1O14576 645 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 N4BP3O15049 544 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 SLC16A4O15374 487 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 SERPINC1P01008 464 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 UQCRHP07919 91 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 MAPTP10636 758 aaKnown RBP9.66□□□□□ -0.86
SMAD4-217ENST00000611848 GAP43P17677 238 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 IBSPP21815 317 aaPredicted RBP9.66□□□□□ -0.86
SMAD4-217ENST00000611848 AFMP43652 599 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 NCKAP1LP55160 1127 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 CUL4BQ13620 913 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 PPP2R2DQ66LE6 453 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 CNNM4Q6P4Q7 775 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 SLC27A1Q6PCB7 646 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 ZNF598Q86UK7 904 aaKnown RBP9.66□□□□□ -0.86
SMAD4-217ENST00000611848 VSTM4Q8IW00 320 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 FAM178BQ8IXR5 827 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 TMEM161BQ8NDZ6 487 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 SPDYE1Q8NFV5 336 aaPredicted RBP9.66□□□□□ -0.86
SMAD4-217ENST00000611848 PGBD4Q96DM1 585 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 CPB2Q96IY4 423 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 MRPL4Q9BYD3 311 aaKnown RBP9.66□□□□□ -0.86
SMAD4-217ENST00000611848 TRIM9Q9C026 710 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 ZHX3Q9H4I2 956 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 ZNF576Q9H609 170 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 INTS13Q9NVM9 706 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 NFE2L3Q9Y4A8 694 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 PCDHB2Q9Y5E7 798 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 COL4A6Q14031 1691 aa9.66□□□□□ -0.86
SMAD4-217ENST00000611848 NLRC5Q86WI3 1866 aa9.65□□□□□ -0.86
SMAD4-217ENST00000611848 PPP1R3GB7ZBB8 358 aa9.65□□□□□ -0.86
SMAD4-217ENST00000611848 B4GALT5O43286 388 aa9.65□□□□□ -0.86
SMAD4-217ENST00000611848 TAP1Q03518 808 aa9.65□□□□□ -0.86
SMAD4-217ENST00000611848 STRN3Q13033 797 aa9.65□□□□□ -0.86
SMAD4-217ENST00000611848 BTG3Q14201 252 aaPredicted RBP9.65□□□□□ -0.86
SMAD4-217ENST00000611848 UBXN11Q5T124 520 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms