RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 SMOC1Q9H4F8 434 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 EPB41L1Q9H4G0 881 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 CLDND1Q9NY35 253 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 WASF3Q9UPY6 502 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 PCDHA2Q9Y5H9 948 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 KIF20BQ96Q89 1820 aa5.71□□□□□ -1.5
LINC00540-201ENST00000611481 SCAMP3O14828 347 aaKnown RBP5.7□□□□□ -1.5
LINC00540-201ENST00000611481 TLR2O60603 784 aa5.7□□□□□ -1.5
LINC00540-201ENST00000611481 BBOX1O75936 387 aa5.7□□□□□ -1.5
LINC00540-201ENST00000611481 CNOT4O95628 575 aaKnown RBP5.7□□□□□ -1.5
LINC00540-201ENST00000611481 COL6A1P12109 1028 aa5.7□□□□□ -1.5
LINC00540-201ENST00000611481 SMAD3P84022 425 aaKnown RBP5.7□□□□□ -1.5
LINC00540-201ENST00000611481 PRKCZQ05513 592 aa5.7□□□□□ -1.5
LINC00540-201ENST00000611481 FOXE3Q13461 319 aa5.7□□□□□ -1.5
LINC00540-201ENST00000611481 KCTD2Q14681 263 aa5.7□□□□□ -1.5
LINC00540-201ENST00000611481 SF3A1Q15459 793 aaKnown RBP5.7□□□□□ -1.5
LINC00540-201ENST00000611481 SHHQ15465 462 aa5.7□□□□□ -1.5
LINC00540-201ENST00000611481 Q6ZUG5 572 aa5.7□□□□□ -1.5
LINC00540-201ENST00000611481 TRIM48Q8IWZ4 208 aa5.7□□□□□ -1.5
LINC00540-201ENST00000611481 FAM169BQ8N8A8 192 aa5.7□□□□□ -1.5
LINC00540-201ENST00000611481 KREMEN2Q8NCW0 462 aa5.7□□□□□ -1.5
LINC00540-201ENST00000611481 AGBL3Q8NEM8 1001 aa5.7□□□□□ -1.5
LINC00540-201ENST00000611481 C11orf49Q9H6J7 331 aa5.7□□□□□ -1.5
LINC00540-201ENST00000611481 POLKQ9UBT6 870 aa5.7□□□□□ -1.5
LINC00540-201ENST00000611481 SLC4A7Q9Y6M7 1214 aa5.7□□□□□ -1.5
LINC00540-201ENST00000611481 ADCY3O60266 1144 aa5.69□□□□□ -1.5
LINC00540-201ENST00000611481 KLHL18O94889 574 aa5.69□□□□□ -1.5
LINC00540-201ENST00000611481 CHGBP05060 677 aa5.69□□□□□ -1.5
LINC00540-201ENST00000611481 GPTP24298 496 aa5.69□□□□□ -1.5
LINC00540-201ENST00000611481 C9orf50Q5SZB4 431 aa5.69□□□□□ -1.5
LINC00540-201ENST00000611481 VASNQ6EMK4 673 aa5.69□□□□□ -1.5
LINC00540-201ENST00000611481 TCTN3Q6NUS6 607 aa5.69□□□□□ -1.5
LINC00540-201ENST00000611481 PPIL6Q8IXY8 311 aa5.69□□□□□ -1.5
LINC00540-201ENST00000611481 ZBTB38Q8NAP3 1195 aaPredicted RBP5.69□□□□□ -1.5
LINC00540-201ENST00000611481 OPTNQ96CV9 577 aa5.69□□□□□ -1.5
LINC00540-201ENST00000611481 GNRHR2Q96P88 292 aa5.69□□□□□ -1.5
LINC00540-201ENST00000611481 LMF1Q96S06 567 aa5.69□□□□□ -1.5
LINC00540-201ENST00000611481 LRP2BPQ9P2M1 347 aa5.69□□□□□ -1.5
LINC00540-201ENST00000611481 CPA4Q9UI42 421 aa5.69□□□□□ -1.5
LINC00540-201ENST00000611481 SPTBN4Q9H254 2564 aa5.69□□□□□ -1.5
LINC00540-201ENST00000611481 SCN9AQ15858 1988 aa5.69□□□□□ -1.5
LINC00540-201ENST00000611481 ADGRA2Q96PE1 1338 aa5.69□□□□□ -1.5
LINC00540-201ENST00000611481 KRIT1O00522 736 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 WNT10BO00744 389 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 TBX1O43435 398 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 FOXS1O43638 330 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 ITGAVP06756 1048 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 LCP1P13796 627 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 KCNJ6P48051 423 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 KCNQ1P51787 676 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 SMAD2Q15796 467 aaKnown RBP5.68□□□□□ -1.5
LINC00540-201ENST00000611481 NRN1LQ496H8 165 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 MIIPQ5JXC2 388 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 SUSD4Q5VX71 490 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 SULT6B1Q6IMI4 303 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 ZNF790Q6PG37 636 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 RNF207Q6ZRF8 634 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 ZNF227Q86WZ6 799 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 APOBEC3FQ8IUX4 373 aaKnown RBP5.68□□□□□ -1.5
LINC00540-201ENST00000611481 DTX3Q8N9I9 347 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 GIMAP8Q8ND71 665 aaPredicted RBP5.68□□□□□ -1.5
LINC00540-201ENST00000611481 TTLL11Q8NHH1 800 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 SEC16BQ96JE7 1060 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 ADOQ96SZ5 270 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 DLL4Q9NR61 685 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 C11orf21Q9P2W6 132 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 RBPJLQ9UBG7 517 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 ASH2LQ9UBL3 628 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 GABRQQ9UN88 632 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 USP16Q9Y5T5 823 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 EPG5Q9HCE0 2579 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 ATRXP46100 2492 aa5.68□□□□□ -1.5
LINC00540-201ENST00000611481 DDX60LQ5H9U9 1706 aaKnown RBP5.68□□□□□ -1.5
LINC00540-201ENST00000611481 DDX60Q8IY21 1712 aaKnown RBP5.68□□□□□ -1.5
LINC00540-201ENST00000611481 FBXO21O94952 628 aa5.67□□□□□ -1.5
LINC00540-201ENST00000611481 ITGB8P26012 769 aa5.67□□□□□ -1.5
LINC00540-201ENST00000611481 PURAQ00577 322 aaKnown RBP5.67□□□□□ -1.5
LINC00540-201ENST00000611481 TFF2Q03403 129 aa5.67□□□□□ -1.5
LINC00540-201ENST00000611481 ABHD18Q0P651 414 aa5.67□□□□□ -1.5
LINC00540-201ENST00000611481 GRAPQ13588 217 aa5.67□□□□□ -1.5
LINC00540-201ENST00000611481 SV2CQ496J9 727 aa5.67□□□□□ -1.5
LINC00540-201ENST00000611481 AKNAD1Q5T1N1 836 aa5.67□□□□□ -1.5
LINC00540-201ENST00000611481 METTL16Q86W50 562 aaKnown RBP5.67□□□□□ -1.5
LINC00540-201ENST00000611481 PROSER1Q86XN7 944 aa5.67□□□□□ -1.5
LINC00540-201ENST00000611481 ANKRD13AQ8IZ07 590 aa5.67□□□□□ -1.5
LINC00540-201ENST00000611481 GRAPLQ8TC17 118 aaPredicted RBP5.67□□□□□ -1.5
LINC00540-201ENST00000611481 AJUBAQ96IF1 538 aa5.67□□□□□ -1.5
LINC00540-201ENST00000611481 LRRC37BQ96QE4 947 aa5.67□□□□□ -1.5
LINC00540-201ENST00000611481 GMLQ99445 158 aa5.67□□□□□ -1.5
LINC00540-201ENST00000611481 EYA3Q99504 573 aa5.67□□□□□ -1.5
LINC00540-201ENST00000611481 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.67□□□□□ -1.5
LINC00540-201ENST00000611481 POLLQ9UGP5 575 aa5.67□□□□□ -1.5
LINC00540-201ENST00000611481 STRIP2Q9ULQ0 834 aa5.67□□□□□ -1.5
LINC00540-201ENST00000611481 ZFR2Q9UPR6 939 aaKnown RBP5.67□□□□□ -1.5
LINC00540-201ENST00000611481 PFASO15067 1338 aa5.67□□□□□ -1.5
LINC00540-201ENST00000611481 UBN2Q6ZU65 1347 aa5.67□□□□□ -1.5
LINC00540-201ENST00000611481 BTBD19C9JJ37 291 aa5.66□□□□□ -1.5
LINC00540-201ENST00000611481 NTSR2O95665 410 aa5.66□□□□□ -1.5
LINC00540-201ENST00000611481 KNG1P01042 644 aa5.66□□□□□ -1.5
LINC00540-201ENST00000611481 GPSM2P81274 684 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms