RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 APBB1IPQ7Z5R6 666 aaPredicted RBP7.01□□□□□ -1.29
CUX1-220ENST00000607092 TMEM173Q86WV6 379 aaPredicted RBP7.01□□□□□ -1.29
CUX1-220ENST00000607092 ZNF280BQ86YH2 543 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 C1orf210Q8IVY1 113 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 C4orf19Q8IY42 314 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 BLIDQ8IZY5 108 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 SLC44A3Q8N4M1 653 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 PRPF31Q8WWY3 499 aaKnown RBP7.01□□□□□ -1.29
CUX1-220ENST00000607092 LPPQ93052 612 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 ZNF668Q96K58 619 aaPredicted RBP7.01□□□□□ -1.29
CUX1-220ENST00000607092 CEP170P1Q96L14 293 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 TCEANC2Q96MN5 208 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 MBOAT7Q96N66 472 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 FAM126AQ9BYI3 521 aaPredicted RBP7.01□□□□□ -1.29
CUX1-220ENST00000607092 AGXT2Q9BYV1 514 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 BCO2Q9BYV7 579 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 PRKD2Q9BZL6 878 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 NT5C3AQ9H0P0 336 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 DHX33Q9H6R0 707 aaKnown RBP7.01□□□□□ -1.29
CUX1-220ENST00000607092 ZSWIM4Q9H7M6 989 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 TBC1D17Q9HA65 648 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 IFT122Q9HBG6 1241 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 CHST7Q9NS84 486 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 FBXO4Q9UKT5 387 aa7.01□□□□□ -1.29
CUX1-220ENST00000607092 MRPS17Q9Y2R5 130 aaKnown RBP7.01□□□□□ -1.29
CUX1-220ENST00000607092 PRG3Q9Y2Y8 225 aaPredicted RBP7.01□□□□□ -1.29
CUX1-220ENST00000607092 CCDC194A0A1B0GVG4 234 aa7□□□□□ -1.29
CUX1-220ENST00000607092 ARL5CA6NH57 179 aa7□□□□□ -1.29
CUX1-220ENST00000607092 PRR5-ARHGAP8B1AHC4 643 aa7□□□□□ -1.29
CUX1-220ENST00000607092 ANHXE9PGG2 379 aa7□□□□□ -1.29
CUX1-220ENST00000607092 RBAK-RBAKDNI3L0D1 243 aa7□□□□□ -1.29
CUX1-220ENST00000607092 C2CD2LO14523 706 aa7□□□□□ -1.29
CUX1-220ENST00000607092 LAMTOR5O43504 91 aa7□□□□□ -1.29
CUX1-220ENST00000607092 FOXD2O60548 495 aaPredicted RBP7□□□□□ -1.29
CUX1-220ENST00000607092 TADA2AO75478 443 aa7□□□□□ -1.29
CUX1-220ENST00000607092 CSDE1O75534 798 aaKnown RBP7□□□□□ -1.29
CUX1-220ENST00000607092 DGAT1O75907 488 aa7□□□□□ -1.29
CUX1-220ENST00000607092 DDHD2O94830 711 aa7□□□□□ -1.29
CUX1-220ENST00000607092 POMCP01189 267 aa7□□□□□ -1.29
CUX1-220ENST00000607092 POU2F2P09086 479 aa7□□□□□ -1.29
CUX1-220ENST00000607092 SRGAP2CP0DJJ0 459 aa7□□□□□ -1.29
CUX1-220ENST00000607092 RPS6KB1P23443 525 aa7□□□□□ -1.29
CUX1-220ENST00000607092 MLLT3P42568 568 aaPredicted RBP7□□□□□ -1.29
CUX1-220ENST00000607092 ARHGAP8P85298 464 aa7□□□□□ -1.29
CUX1-220ENST00000607092 DSC1Q08554 894 aa7□□□□□ -1.29
CUX1-220ENST00000607092 GRIK3Q13003 919 aa7□□□□□ -1.29
CUX1-220ENST00000607092 DRP2Q13474 957 aa7□□□□□ -1.29
CUX1-220ENST00000607092 PPP2R5DQ14738 602 aa7□□□□□ -1.29
CUX1-220ENST00000607092 EPHA7Q15375 998 aa7□□□□□ -1.29
CUX1-220ENST00000607092 NTRK3Q16288 839 aa7□□□□□ -1.29
CUX1-220ENST00000607092 ADCK5Q3MIX3 580 aa7□□□□□ -1.29
CUX1-220ENST00000607092 KIAA0319Q5VV43 1072 aa7□□□□□ -1.29
CUX1-220ENST00000607092 NEK8Q86SG6 692 aa7□□□□□ -1.29
CUX1-220ENST00000607092 COLGALT2Q8IYK4 626 aa7□□□□□ -1.29
CUX1-220ENST00000607092 RNF168Q8IYW5 571 aaPredicted RBP7□□□□□ -1.29
CUX1-220ENST00000607092 RNF149Q8NC42 400 aa7□□□□□ -1.29
CUX1-220ENST00000607092 ETNPPLQ8TBG4 499 aa7□□□□□ -1.29
CUX1-220ENST00000607092 BCL7CQ8WUZ0 217 aaPredicted RBP7□□□□□ -1.29
CUX1-220ENST00000607092 WASF1Q92558 559 aa7□□□□□ -1.29
CUX1-220ENST00000607092 KCNB2Q92953 911 aa7□□□□□ -1.29
CUX1-220ENST00000607092 ZNF274Q96GC6 653 aaPredicted RBP7□□□□□ -1.29
CUX1-220ENST00000607092 PRIMPOLQ96LW4 560 aa7□□□□□ -1.29
CUX1-220ENST00000607092 JAKMIP1Q96N16 626 aaKnown RBP7□□□□□ -1.29
CUX1-220ENST00000607092 CEP89Q96ST8 783 aa7□□□□□ -1.29
CUX1-220ENST00000607092 MTRQ99707 1265 aa7□□□□□ -1.29
CUX1-220ENST00000607092 IER2Q9BTL4 223 aa7□□□□□ -1.29
CUX1-220ENST00000607092 NFKBIZQ9BYH8 718 aa7□□□□□ -1.29
CUX1-220ENST00000607092 CSRNP2Q9H175 543 aa7□□□□□ -1.29
CUX1-220ENST00000607092 BRMS1Q9HCU9 246 aa7□□□□□ -1.29
CUX1-220ENST00000607092 VPS54Q9P1Q0 977 aa7□□□□□ -1.29
CUX1-220ENST00000607092 CDH22Q9UJ99 828 aa7□□□□□ -1.29
CUX1-220ENST00000607092 ADAM28Q9UKQ2 775 aa7□□□□□ -1.29
CUX1-220ENST00000607092 PCDHGA2Q9Y5H1 932 aa7□□□□□ -1.29
CUX1-220ENST00000607092 KMT2BQ9UMN6 2715 aaPredicted RBP7□□□□□ -1.29
CUX1-220ENST00000607092 CACNA1GO43497 2377 aa7□□□□□ -1.29
CUX1-220ENST00000607092 ATRXP46100 2492 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 DENND4AQ7Z401 1863 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 INO80B-WBP1J3KQ70 363 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 TRAPPC3O43617 180 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 PI15O43692 258 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 STBD1O95210 358 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 LYPLA2O95372 231 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 TDP2O95551 362 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 XRCC6P12956 609 aaKnown RBP eCLIP6.99□□□□□ -1.29
CUX1-220ENST00000607092 FSHRP23945 695 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 PDIA3P30101 505 aaKnown RBP6.99□□□□□ -1.29
CUX1-220ENST00000607092 HOXA11P31270 313 aaPredicted RBP6.99□□□□□ -1.29
CUX1-220ENST00000607092 YWHABP31946 246 aaKnown RBP6.99□□□□□ -1.29
CUX1-220ENST00000607092 HSPA4P34932 840 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 NRLP54845 237 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 STARD6P59095 220 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 PTENP60484 403 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 LMNB2Q03252 620 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 HTR4Q13639 388 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 EMC2Q15006 297 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 UVSSAQ2YD98 709 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 LONRF3Q496Y0 759 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 XKR9Q5GH70 373 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 PPP1R15BQ5SWA1 713 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 FUT10Q6P4F1 479 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms