RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 SESN3P58005 492 aa19.68■□□□□ 0.74
UPF1-210ENST00000600689 OLIG1Q8TAK6 271 aa19.68■□□□□ 0.74
UPF1-210ENST00000600689 NKX1-2Q9UD57 310 aaPredicted RBP19.68■□□□□ 0.74
UPF1-210ENST00000600689 ZMYND8Q9ULU4 1186 aaPredicted RBP19.68■□□□□ 0.74
UPF1-210ENST00000600689 NENFQ9UMX5 172 aa19.68■□□□□ 0.74
UPF1-210ENST00000600689 PLIN4Q96Q06 1357 aa19.68■□□□□ 0.74
UPF1-210ENST00000600689 FAM86B1E9PN63 330 aa19.67■□□□□ 0.74
UPF1-210ENST00000600689 FAM86B2P0C5J1 330 aa19.67■□□□□ 0.74
UPF1-210ENST00000600689 TARSP26639 723 aaKnown RBP19.67■□□□□ 0.74
UPF1-210ENST00000600689 DLG4P78352 724 aa19.67■□□□□ 0.74
UPF1-210ENST00000600689 MYL7Q01449 175 aa19.67■□□□□ 0.74
UPF1-210ENST00000600689 BIRC2Q13490 618 aa19.67■□□□□ 0.74
UPF1-210ENST00000600689 C2CD6Q53TS8 623 aa19.67■□□□□ 0.74
UPF1-210ENST00000600689 VSIG1Q86XK7 387 aa19.67■□□□□ 0.74
UPF1-210ENST00000600689 ERMNQ8TAM6 284 aa19.67■□□□□ 0.74
UPF1-210ENST00000600689 MASTLQ96GX5 879 aa19.67■□□□□ 0.74
UPF1-210ENST00000600689 C9orf72Q96LT7 481 aa19.67■□□□□ 0.74
UPF1-210ENST00000600689 PKD2L1Q9P0L9 805 aa19.67■□□□□ 0.74
UPF1-210ENST00000600689 CHRNA3P32297 505 aa19.67■□□□□ 0.74
UPF1-210ENST00000600689 CLK2P49760 499 aaKnown RBP19.67■□□□□ 0.74
UPF1-210ENST00000600689 CYP4F22Q6NT55 531 aa19.67■□□□□ 0.74
UPF1-210ENST00000600689 VSTM1Q6UX27 236 aa19.67■□□□□ 0.74
UPF1-210ENST00000600689 SYT2Q8N9I0 419 aaPredicted RBP19.67■□□□□ 0.74
UPF1-210ENST00000600689 TAOK3Q9H2K8 898 aa19.67■□□□□ 0.74
UPF1-210ENST00000600689 GSTTP1A0A1W2PQM5 241 aa19.67■□□□□ 0.74
UPF1-210ENST00000600689 ANKRD62A6NC57 917 aa19.67■□□□□ 0.74
UPF1-210ENST00000600689 DDTLA6NHG4 134 aaPredicted RBP19.67■□□□□ 0.74
UPF1-210ENST00000600689 PPP1R12AO14974 1030 aaPredicted RBP19.67■□□□□ 0.74
UPF1-210ENST00000600689 ATP2A2P16615 1042 aaKnown RBP19.67■□□□□ 0.74
UPF1-210ENST00000600689 NPEPPSP55786 919 aa19.67■□□□□ 0.74
UPF1-210ENST00000600689 AGPAT1Q99943 283 aa19.67■□□□□ 0.74
UPF1-210ENST00000600689 SUGT1Q9Y2Z0 365 aa19.67■□□□□ 0.74
UPF1-210ENST00000600689 SMARCA1P28370 1054 aa19.66■□□□□ 0.74
UPF1-210ENST00000600689 COILP38432 576 aaPredicted RBP19.66■□□□□ 0.74
UPF1-210ENST00000600689 GCLMP48507 274 aa19.66■□□□□ 0.74
UPF1-210ENST00000600689 ZSWIM1Q9BR11 485 aa19.66■□□□□ 0.74
UPF1-210ENST00000600689 THAP12O43422 761 aa19.66■□□□□ 0.74
UPF1-210ENST00000600689 CHRNA5P30532 468 aa19.66■□□□□ 0.74
UPF1-210ENST00000600689 SLC8A3P57103 927 aa19.66■□□□□ 0.74
UPF1-210ENST00000600689 KRT17Q04695 432 aa19.66■□□□□ 0.74
UPF1-210ENST00000600689 MGAT5Q09328 741 aa19.66■□□□□ 0.74
UPF1-210ENST00000600689 THEMIS2Q5TEJ8 643 aa19.66■□□□□ 0.74
UPF1-210ENST00000600689 ARHGEF19Q8IW93 802 aa19.66■□□□□ 0.74
UPF1-210ENST00000600689 PARD3BQ8TEW8 1205 aa19.66■□□□□ 0.74
UPF1-210ENST00000600689 HEMGNQ9BXL5 484 aa19.66■□□□□ 0.74
UPF1-210ENST00000600689 GPR88Q9GZN0 384 aa19.66■□□□□ 0.74
UPF1-210ENST00000600689 KCNMB3Q9NPA1 279 aa19.66■□□□□ 0.74
UPF1-210ENST00000600689 KLHL14Q9P2G3 628 aa19.66■□□□□ 0.74
UPF1-210ENST00000600689 HAO1Q9UJM8 370 aa19.66■□□□□ 0.74
UPF1-210ENST00000600689 FRMD4BQ9Y2L6 1034 aa19.66■□□□□ 0.74
UPF1-210ENST00000600689 ERFP50548 548 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 HYIQ5T013 277 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 CRELD2Q6UXH1 353 aaPredicted RBP19.65■□□□□ 0.74
UPF1-210ENST00000600689 RNF207Q6ZRF8 634 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 STMN4Q9H169 189 aaPredicted RBP19.65■□□□□ 0.74
UPF1-210ENST00000600689 APEX2Q9UBZ4 518 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 INTUQ9ULD6 942 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 ARL2BPQ9Y2Y0 163 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 SYNGAP1Q96PV0 1343 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 PITPNM2Q9BZ72 1349 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 RARGP13631 454 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 PCK1P35558 622 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 BNIP1Q12981 228 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 GNPTABQ3T906 1256 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 HHIPL2Q6UWX4 724 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 EPM2AIP1Q7L775 607 aaPredicted RBP19.65■□□□□ 0.74
UPF1-210ENST00000600689 ARMC2Q8NEN0 867 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 TMX4Q9H1E5 349 aaPredicted RBP19.65■□□□□ 0.74
UPF1-210ENST00000600689 PASKQ96RG2 1323 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 SGPL1O95470 568 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 ECEL1O95672 775 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 CCND1P24385 295 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 DNAJC3Q13217 504 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 EPC2Q52LR7 807 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 ZC3H3Q8IXZ2 948 aaKnown RBP19.65■□□□□ 0.74
UPF1-210ENST00000600689 ERP27Q96DN0 273 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 IFT74Q96LB3 600 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 OSBPL1AQ9BXW6 950 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 SLC5A4Q9NY91 659 aa19.65■□□□□ 0.74
UPF1-210ENST00000600689 TTC7AQ9ULT0 858 aaPredicted RBP19.65■□□□□ 0.74
UPF1-210ENST00000600689 NRXN2Q9P2S2 1712 aa19.64■□□□□ 0.74
UPF1-210ENST00000600689 NCANO14594 1321 aa19.64■□□□□ 0.73
UPF1-210ENST00000600689 HLA-DOAP06340 250 aa19.64■□□□□ 0.73
UPF1-210ENST00000600689 CETPP11597 493 aa19.64■□□□□ 0.73
UPF1-210ENST00000600689 ABL2P42684 1182 aa19.64■□□□□ 0.73
UPF1-210ENST00000600689 SLMAPQ14BN4 828 aa19.64■□□□□ 0.73
UPF1-210ENST00000600689 TMED2Q15363 201 aa19.64■□□□□ 0.73
UPF1-210ENST00000600689 FOXR2Q6PJQ5 311 aa19.64■□□□□ 0.73
UPF1-210ENST00000600689 INTS8Q75QN2 995 aaKnown RBP19.64■□□□□ 0.73
UPF1-210ENST00000600689 HS2ST1Q7LGA3 356 aa19.64■□□□□ 0.73
UPF1-210ENST00000600689 FAM84AQ96KN4 292 aa19.64■□□□□ 0.73
UPF1-210ENST00000600689 EIF2AK1Q9BQI3 630 aaKnown RBP19.64■□□□□ 0.73
UPF1-210ENST00000600689 CHST7Q9NS84 486 aa19.64■□□□□ 0.73
UPF1-210ENST00000600689 MTUS1Q9ULD2 1270 aa19.64■□□□□ 0.73
UPF1-210ENST00000600689 SCN9AQ15858 1988 aa19.64■□□□□ 0.73
UPF1-210ENST00000600689 A0A1W2PRG0 241 aa19.64■□□□□ 0.73
UPF1-210ENST00000600689 DDX39AO00148 427 aaKnown RBP19.64■□□□□ 0.73
UPF1-210ENST00000600689 RRP1BQ14684 758 aaKnown RBP19.64■□□□□ 0.73
UPF1-210ENST00000600689 SGO2Q562F6 1265 aa19.64■□□□□ 0.73
UPF1-210ENST00000600689 RINT1Q6NUQ1 792 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms