RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 SMC2O95347 1197 aa21.18■□□□□ 0.98
UPF1-209ENST00000600310 MCF2P10911 925 aa21.18■□□□□ 0.98
UPF1-209ENST00000600310 ITGA4P13612 1032 aa21.18■□□□□ 0.98
UPF1-209ENST00000600310 DNAJB2P25686 324 aa21.18■□□□□ 0.98
UPF1-209ENST00000600310 GATMP50440 423 aa21.18■□□□□ 0.98
UPF1-209ENST00000600310 MCL1Q07820 350 aa21.18■□□□□ 0.98
UPF1-209ENST00000600310 STK4Q13043 487 aa21.18■□□□□ 0.98
UPF1-209ENST00000600310 CLLU1OSQ5K130 101 aa21.18■□□□□ 0.98
UPF1-209ENST00000600310 SLC39A4Q6P5W5 647 aa21.18■□□□□ 0.98
UPF1-209ENST00000600310 CMTR2Q8IYT2 770 aaKnown RBP21.18■□□□□ 0.98
UPF1-209ENST00000600310 KIAA0895Q8NCT3 520 aa21.18■□□□□ 0.98
UPF1-209ENST00000600310 SCFD1Q8WVM8 642 aa21.18■□□□□ 0.98
UPF1-209ENST00000600310 GSDMAQ96QA5 445 aa21.18■□□□□ 0.98
UPF1-209ENST00000600310 TMEM117Q9H0C3 514 aa21.18■□□□□ 0.98
UPF1-209ENST00000600310 PCDHA5Q9Y5H7 936 aa21.18■□□□□ 0.98
UPF1-209ENST00000600310 UBE4BO95155 1302 aa21.18■□□□□ 0.98
UPF1-209ENST00000600310 LCHNA4D1U4 455 aa21.17■□□□□ 0.98
UPF1-209ENST00000600310 ANKRD63C9JTQ0 380 aa21.17■□□□□ 0.98
UPF1-209ENST00000600310 BMT2Q1RMZ1 405 aa21.17■□□□□ 0.98
UPF1-209ENST00000600310 ZBTB33Q86T24 672 aa21.17■□□□□ 0.98
UPF1-209ENST00000600310 ABI1Q8IZP0 508 aa21.17■□□□□ 0.98
UPF1-209ENST00000600310 RSPH1Q8WYR4 309 aa21.17■□□□□ 0.98
UPF1-209ENST00000600310 SMARCE1Q969G3 411 aa21.17■□□□□ 0.98
UPF1-209ENST00000600310 RNF39Q9H2S5 420 aa21.17■□□□□ 0.98
UPF1-209ENST00000600310 RSAD1Q9HA92 442 aa21.17■□□□□ 0.98
UPF1-209ENST00000600310 UBN1Q9NPG3 1134 aa21.17■□□□□ 0.98
UPF1-209ENST00000600310 RMND1Q9NWS8 449 aa21.17■□□□□ 0.98
UPF1-209ENST00000600310 ANKFY1Q9P2R3 1169 aa21.17■□□□□ 0.98
UPF1-209ENST00000600310 GIT1Q9Y2X7 761 aa21.17■□□□□ 0.98
UPF1-209ENST00000600310 STYXL1Q9Y6J8 313 aa21.17■□□□□ 0.98
UPF1-209ENST00000600310 OFD1O75665 1012 aa21.16■□□□□ 0.98
UPF1-209ENST00000600310 CA3P07451 260 aa21.16■□□□□ 0.98
UPF1-209ENST00000600310 HOXD13P35453 343 aa21.16■□□□□ 0.98
UPF1-209ENST00000600310 GRM5P41594 1212 aa21.16■□□□□ 0.98
UPF1-209ENST00000600310 NOLC1Q14978 699 aaKnown RBP eCLIP21.16■□□□□ 0.98
UPF1-209ENST00000600310 SLFN12LQ6IEE8 588 aa21.16■□□□□ 0.98
UPF1-209ENST00000600310 GLB1LQ6UWU2 654 aa21.16■□□□□ 0.98
UPF1-209ENST00000600310 SYCP3Q8IZU3 236 aa21.16■□□□□ 0.98
UPF1-209ENST00000600310 ERCC4Q92889 916 aaPredicted RBP21.16■□□□□ 0.98
UPF1-209ENST00000600310 TIFAQ96CG3 184 aa21.16■□□□□ 0.98
UPF1-209ENST00000600310 CASD1Q96PB1 797 aa21.16■□□□□ 0.98
UPF1-209ENST00000600310 APOL6Q9BWW8 343 aa21.16■□□□□ 0.98
UPF1-209ENST00000600310 HAPLN2Q9GZV7 340 aa21.16■□□□□ 0.98
UPF1-209ENST00000600310 IKZF4Q9H2S9 585 aa21.16■□□□□ 0.98
UPF1-209ENST00000600310 NKX2-4Q9H2Z4 354 aa21.16■□□□□ 0.98
UPF1-209ENST00000600310 SNTG2Q9NY99 539 aa21.16■□□□□ 0.98
UPF1-209ENST00000600310 A0A0B4J269 797 aa21.15■□□□□ 0.98
UPF1-209ENST00000600310 TBKBP1A7MCY6 615 aa21.15■□□□□ 0.98
UPF1-209ENST00000600310 MCM4P33991 863 aa21.15■□□□□ 0.98
UPF1-209ENST00000600310 BTG3Q14201 252 aaPredicted RBP21.15■□□□□ 0.98
UPF1-209ENST00000600310 GPT2Q8TD30 523 aa21.15■□□□□ 0.98
UPF1-209ENST00000600310 HELQQ8TDG4 1101 aa21.15■□□□□ 0.98
UPF1-209ENST00000600310 LRCH3Q96II8 777 aa21.15■□□□□ 0.98
UPF1-209ENST00000600310 COL4A6Q14031 1691 aa21.15■□□□□ 0.98
UPF1-209ENST00000600310 ZMYM2Q9UBW7 1377 aa21.14■□□□□ 0.98
UPF1-209ENST00000600310 TISP43B9A030 160 aa21.14■□□□□ 0.97
UPF1-209ENST00000600310 INPPL1O15357 1258 aa21.14■□□□□ 0.97
UPF1-209ENST00000600310 ARHGEF15O94989 841 aa21.14■□□□□ 0.97
UPF1-209ENST00000600310 HARSP12081 509 aaKnown RBP21.14■□□□□ 0.97
UPF1-209ENST00000600310 AKAP5P24588 427 aa21.14■□□□□ 0.97
UPF1-209ENST00000600310 MATR3P43243 847 aaKnown RBP eCLIP21.14■□□□□ 0.97
UPF1-209ENST00000600310 PAN2Q504Q3 1202 aaKnown RBP21.14■□□□□ 0.97
UPF1-209ENST00000600310 NOMO2Q5JPE7 1267 aa21.14■□□□□ 0.97
UPF1-209ENST00000600310 FIBCD1Q8N539 461 aa21.14■□□□□ 0.97
UPF1-209ENST00000600310 CEP120Q8N960 986 aa21.14■□□□□ 0.97
UPF1-209ENST00000600310 GAD1Q99259 594 aa21.14■□□□□ 0.97
UPF1-209ENST00000600310 CCDC94Q9BW85 323 aaPredicted RBP21.14■□□□□ 0.97
UPF1-209ENST00000600310 CLSTN2Q9H4D0 955 aa21.14■□□□□ 0.97
UPF1-209ENST00000600310 PARP2Q9UGN5 583 aa21.14■□□□□ 0.97
UPF1-209ENST00000600310 GDAQ9Y2T3 454 aa21.14■□□□□ 0.97
UPF1-209ENST00000600310 TMEM265A0A087WTH1 108 aa21.13■□□□□ 0.97
UPF1-209ENST00000600310 LINC01553A4QN01 128 aa21.13■□□□□ 0.97
UPF1-209ENST00000600310 RECQL4O94761 1208 aa21.13■□□□□ 0.97
UPF1-209ENST00000600310 ADSSP30520 456 aa21.13■□□□□ 0.97
UPF1-209ENST00000600310 SNRPFP62306 86 aaKnown RBP21.13■□□□□ 0.97
UPF1-209ENST00000600310 TAP1Q03518 808 aa21.13■□□□□ 0.97
UPF1-209ENST00000600310 CAMK4Q16566 473 aa21.13■□□□□ 0.97
UPF1-209ENST00000600310 KYAT1Q16773 422 aa21.13■□□□□ 0.97
UPF1-209ENST00000600310 KNOP1Q1ED39 458 aaKnown RBP21.13■□□□□ 0.97
UPF1-209ENST00000600310 NELFCDQ8IXH7 590 aa21.13■□□□□ 0.97
UPF1-209ENST00000600310 THNSL1Q8IYQ7 743 aa21.13■□□□□ 0.97
UPF1-209ENST00000600310 MRPL9Q9BYD2 267 aaKnown RBP21.13■□□□□ 0.97
UPF1-209ENST00000600310 GTPBP4Q9BZE4 634 aaKnown RBP21.13■□□□□ 0.97
UPF1-209ENST00000600310 GBP3Q9H0R5 595 aa21.13■□□□□ 0.97
UPF1-209ENST00000600310 SLC28A3Q9HAS3 691 aa21.13■□□□□ 0.97
UPF1-209ENST00000600310 MAN1B1Q9UKM7 699 aa21.13■□□□□ 0.97
UPF1-209ENST00000600310 ARL5CA6NH57 179 aa21.12■□□□□ 0.97
UPF1-209ENST00000600310 OGTO15294 1046 aa21.12■□□□□ 0.97
UPF1-209ENST00000600310 TGFB1I1O43294 461 aa21.12■□□□□ 0.97
UPF1-209ENST00000600310 FAM189A1O60320 539 aa21.12■□□□□ 0.97
UPF1-209ENST00000600310 MBD3O95983 291 aa21.12■□□□□ 0.97
UPF1-209ENST00000600310 GARTP22102 1010 aa21.12■□□□□ 0.97
UPF1-209ENST00000600310 MLH1P40692 756 aa21.12■□□□□ 0.97
UPF1-209ENST00000600310 AFF1P51825 1210 aaKnown RBP21.12■□□□□ 0.97
UPF1-209ENST00000600310 ZNF658Q5TYW1 1059 aaPredicted RBP21.12■□□□□ 0.97
UPF1-209ENST00000600310 PPP2R2DQ66LE6 453 aa21.12■□□□□ 0.97
UPF1-209ENST00000600310 GPR153Q6NV75 609 aa21.12■□□□□ 0.97
UPF1-209ENST00000600310 LRRC55Q6ZSA7 311 aa21.12■□□□□ 0.97
UPF1-209ENST00000600310 TMEM192Q8IY95 271 aa21.12■□□□□ 0.97
UPF1-209ENST00000600310 LRRC43Q8N309 656 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms