RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 UBN1Q9NPG3 1134 aa6.83□□□□□ -1.32
VRK3-220ENST00000600259 ZDHHC7Q9NXF8 308 aa6.83□□□□□ -1.32
VRK3-220ENST00000600259 DLL3Q9NYJ7 618 aa6.83□□□□□ -1.32
VRK3-220ENST00000600259 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.83□□□□□ -1.32
VRK3-220ENST00000600259 DDX25Q9UHL0 483 aaKnown RBP6.83□□□□□ -1.32
VRK3-220ENST00000600259 CA14Q9ULX7 337 aa6.83□□□□□ -1.32
VRK3-220ENST00000600259 SSX2IPQ9Y2D8 614 aa6.83□□□□□ -1.32
VRK3-220ENST00000600259 HES2Q9Y543 173 aa6.83□□□□□ -1.32
VRK3-220ENST00000600259 SPTBN2O15020 2390 aa6.83□□□□□ -1.32
VRK3-220ENST00000600259 DOCK8Q8NF50 2099 aa6.83□□□□□ -1.32
VRK3-220ENST00000600259 SHISA7A6NL88 538 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 CDC45O75419 566 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 ZMYND10O75800 440 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 DEXIO95424 95 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 ARF4P18085 180 aaPredicted RBP6.82□□□□□ -1.32
VRK3-220ENST00000600259 RPL17P18621 184 aaKnown RBP6.82□□□□□ -1.32
VRK3-220ENST00000600259 IGFBP6P24592 240 aaPredicted RBP6.82□□□□□ -1.32
VRK3-220ENST00000600259 AXLP30530 894 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 GBP2P32456 591 aaPredicted RBP6.82□□□□□ -1.32
VRK3-220ENST00000600259 ARL2P36404 184 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 OR1G1P47890 313 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 FGD1P98174 961 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 SSRP1Q08945 709 aaKnown RBP6.82□□□□□ -1.32
VRK3-220ENST00000600259 NONOQ15233 471 aaKnown RBP eCLIP6.82□□□□□ -1.32
VRK3-220ENST00000600259 EARS2Q5JPH6 523 aaKnown RBP6.82□□□□□ -1.32
VRK3-220ENST00000600259 GALNT17Q6IS24 598 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 FUT10Q6P4F1 479 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 C1orf210Q8IVY1 113 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 EXOC8Q8IYI6 725 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 FAM177A1Q8N128 213 aaPredicted RBP6.82□□□□□ -1.32
VRK3-220ENST00000600259 DCLK2Q8N568 766 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 RNF149Q8NC42 400 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 SLC7A3Q8WY07 619 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 RIN2Q8WYP3 895 aaPredicted RBP6.82□□□□□ -1.32
VRK3-220ENST00000600259 STAMQ92783 540 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 FGF14Q92915 247 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 CCDC51Q96ER9 411 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 ZNF274Q96GC6 653 aaPredicted RBP6.82□□□□□ -1.32
VRK3-220ENST00000600259 DYDC2Q96IM9 177 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 CPB2Q96IY4 423 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 HSD17B14Q9BPX1 270 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 CLSTN3Q9BQT9 956 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 PAAF1Q9BRP4 392 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 LARP6Q9BRS8 491 aaKnown RBP6.82□□□□□ -1.32
VRK3-220ENST00000600259 PHF20Q9BVI0 1012 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 COLEC11Q9BWP8 271 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 CXCL16Q9H2A7 254 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 ZSWIM6Q9HCJ5 1215 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 GJB4Q9NTQ9 266 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 DPP7Q9UHL4 492 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 KCNJ14Q9UNX9 436 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 GIT1Q9Y2X7 761 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 SIT1Q9Y3P8 196 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 C2orf16Q68DN1 1984 aa6.82□□□□□ -1.32
VRK3-220ENST00000600259 ACACBO00763 2458 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 A0A1B0GUA9 196 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 TTLL13PA6NNM8 815 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 STK25O00506 426 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 TBX3O15119 743 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 ADAM12O43184 909 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 B4GALT5O43286 388 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 DKC1O60832 514 aaKnown RBP eCLIP6.81□□□□□ -1.32
VRK3-220ENST00000600259 DTNBO60941 627 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 LYPLA2O95372 231 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 TGM1P22735 817 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 GLRA2P23416 452 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 AKAP5P24588 427 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 YWHABP31946 246 aaKnown RBP6.81□□□□□ -1.32
VRK3-220ENST00000600259 MLH1P40692 756 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 NTHL1P78549 312 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 MBTD1Q05BQ5 628 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 FZD5Q13467 585 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 CAPSQ13938 189 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 CTTNQ14247 550 aaKnown RBP6.81□□□□□ -1.32
VRK3-220ENST00000600259 PUM1Q14671 1186 aaKnown RBP eCLIP6.81□□□□□ -1.32
VRK3-220ENST00000600259 EMC2Q15006 297 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 PCBP1Q15365 356 aaKnown RBP eCLIP6.81□□□□□ -1.32
VRK3-220ENST00000600259 NAB2Q15742 525 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 USP41Q3LFD5 358 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 XKR9Q5GH70 373 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 RTP2Q5QGT7 225 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 DCLRE1AQ6PJP8 1040 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 PRSS55Q6UWB4 352 aaPredicted RBP6.81□□□□□ -1.32
VRK3-220ENST00000600259 PARM1Q6UWI2 310 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 RUFY3Q7L099 469 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 KRT25Q7Z3Z0 450 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 CDR2LQ86X02 465 aaPredicted RBP6.81□□□□□ -1.32
VRK3-220ENST00000600259 KIAA2013Q8IYS2 634 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 PJA1Q8NG27 643 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 LNX1Q8TBB1 728 aaPredicted RBP6.81□□□□□ -1.32
VRK3-220ENST00000600259 OXER1Q8TDS5 423 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 ASAP3Q8TDY4 903 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 TCP11Q8WWU5 503 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 RUBCNQ92622 972 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 RABGGTAQ92696 567 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 NELL1Q92832 810 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 LXNQ9BS40 222 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 NFKBIZQ9BYH8 718 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 FOXQ1Q9C009 403 aa6.81□□□□□ -1.32
VRK3-220ENST00000600259 NXF3Q9H4D5 531 aaKnown RBP6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms