RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 STK4Q13043 487 aa18.12■□□□□ 0.49
SHKBP1-219ENST00000599575 NOLC1Q14978 699 aaKnown RBP eCLIP18.12■□□□□ 0.49
SHKBP1-219ENST00000599575 TRIML1Q8N9V2 468 aa18.12■□□□□ 0.49
SHKBP1-219ENST00000599575 SMG8Q8ND04 991 aaKnown RBP18.12■□□□□ 0.49
SHKBP1-219ENST00000599575 TMEM174Q8WUU8 243 aa18.12■□□□□ 0.49
SHKBP1-219ENST00000599575 EIF2AQ9BY44 585 aaKnown RBP18.12■□□□□ 0.49
SHKBP1-219ENST00000599575 GBP3Q9H0R5 595 aa18.12■□□□□ 0.49
SHKBP1-219ENST00000599575 TOPORSQ9NS56 1045 aaPredicted RBP18.12■□□□□ 0.49
SHKBP1-219ENST00000599575 TTC3P53804 2025 aa18.11■□□□□ 0.49
SHKBP1-219ENST00000599575 A0A0B4J269 797 aa18.11■□□□□ 0.49
SHKBP1-219ENST00000599575 ABLIM1O14639 778 aa18.11■□□□□ 0.49
SHKBP1-219ENST00000599575 GARTP22102 1010 aa18.11■□□□□ 0.49
SHKBP1-219ENST00000599575 GRM5P41594 1212 aa18.11■□□□□ 0.49
SHKBP1-219ENST00000599575 EEF1DP3Q658K8 133 aa18.11■□□□□ 0.49
SHKBP1-219ENST00000599575 HS2ST1Q7LGA3 356 aa18.11■□□□□ 0.49
SHKBP1-219ENST00000599575 GUF1Q8N442 669 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-219ENST00000599575 SCFD1Q8WVM8 642 aa18.11■□□□□ 0.49
SHKBP1-219ENST00000599575 TSPAN18Q96SJ8 248 aa18.11■□□□□ 0.49
SHKBP1-219ENST00000599575 CCDC94Q9BW85 323 aaPredicted RBP18.11■□□□□ 0.49
SHKBP1-219ENST00000599575 CDT1Q9H211 546 aa18.11■□□□□ 0.49
SHKBP1-219ENST00000599575 CLSTN2Q9H4D0 955 aa18.11■□□□□ 0.49
SHKBP1-219ENST00000599575 RSAD1Q9HA92 442 aa18.11■□□□□ 0.49
SHKBP1-219ENST00000599575 SLC39A2Q9NP94 309 aa18.11■□□□□ 0.49
SHKBP1-219ENST00000599575 RWDD3Q9Y3V2 267 aa18.11■□□□□ 0.49
SHKBP1-219ENST00000599575 LDHAP00338 332 aaKnown RBP18.1■□□□□ 0.49
SHKBP1-219ENST00000599575 YARSP54577 528 aaKnown RBP18.1■□□□□ 0.49
SHKBP1-219ENST00000599575 KNOP1Q1ED39 458 aaKnown RBP18.1■□□□□ 0.49
SHKBP1-219ENST00000599575 HABP4Q5JVS0 413 aaKnown RBP18.1■□□□□ 0.49
SHKBP1-219ENST00000599575 ZNF658Q5TYW1 1059 aaPredicted RBP18.1■□□□□ 0.49
SHKBP1-219ENST00000599575 SAMD11Q96NU1 681 aa18.1■□□□□ 0.49
SHKBP1-219ENST00000599575 PBX4Q9BYU1 374 aa18.1■□□□□ 0.49
SHKBP1-219ENST00000599575 NUP62CLQ9H1M0 184 aa18.1■□□□□ 0.49
SHKBP1-219ENST00000599575 KIAA1468Q9P260 1216 aa18.1■□□□□ 0.49
SHKBP1-219ENST00000599575 ANKFY1Q9P2R3 1169 aa18.1■□□□□ 0.49
SHKBP1-219ENST00000599575 LAMA3Q16787 3333 aa18.1■□□□□ 0.49
SHKBP1-219ENST00000599575 MYH11P35749 1972 aa18.1■□□□□ 0.49
SHKBP1-219ENST00000599575 LAMA2P24043 3122 aaKnown RBP18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 OGTO15294 1046 aa18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 PRPF6O94906 941 aaKnown RBP18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 CLTAP09496 248 aa18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 DNAJB2P25686 324 aa18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 MATR3P43243 847 aaKnown RBP eCLIP18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 BTG3Q14201 252 aaPredicted RBP18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 MYBPC2Q14324 1141 aa18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 FAM109BQ6ICB4 259 aaPredicted RBP18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 AGMOQ6ZNB7 445 aa18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 C12orf56Q8IXR9 622 aa18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 LRRC43Q8N309 656 aa18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 RNF169Q8NCN4 708 aa18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 KIAA0895Q8NCT3 520 aa18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 URGCPQ8TCY9 931 aa18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 HPS3Q969F9 1004 aa18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 FGFBP2Q9BYJ0 223 aa18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 NXF3Q9H4D5 531 aaKnown RBP18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 SLC28A3Q9HAS3 691 aa18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 PLEKHA5Q9HAU0 1116 aa18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 KIAA1586Q9HCI6 787 aa18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 TRIOBPQ9H2D6 2365 aa18.09■□□□□ 0.49
SHKBP1-219ENST00000599575 PDXKO00764 312 aa18.08■□□□□ 0.48
SHKBP1-219ENST00000599575 OFD1O75665 1012 aa18.08■□□□□ 0.48
SHKBP1-219ENST00000599575 KCNA1Q09470 495 aa18.08■□□□□ 0.48
SHKBP1-219ENST00000599575 STIM1Q13586 685 aa18.08■□□□□ 0.48
SHKBP1-219ENST00000599575 NOMO2Q5JPE7 1267 aa18.08■□□□□ 0.48
SHKBP1-219ENST00000599575 FAM117BQ6P1L5 589 aa18.08■□□□□ 0.48
SHKBP1-219ENST00000599575 SLC39A4Q6P5W5 647 aa18.08■□□□□ 0.48
SHKBP1-219ENST00000599575 CDR2LQ86X02 465 aaPredicted RBP18.08■□□□□ 0.48
SHKBP1-219ENST00000599575 CD302Q8IX05 232 aa18.08■□□□□ 0.48
SHKBP1-219ENST00000599575 FIBCD1Q8N539 461 aa18.08■□□□□ 0.48
SHKBP1-219ENST00000599575 GPT2Q8TD30 523 aa18.08■□□□□ 0.48
SHKBP1-219ENST00000599575 POMGNT1Q8WZA1 660 aa18.08■□□□□ 0.48
SHKBP1-219ENST00000599575 CLP1Q92989 425 aaKnown RBP18.08■□□□□ 0.48
SHKBP1-219ENST00000599575 TIFAQ96CG3 184 aa18.08■□□□□ 0.48
SHKBP1-219ENST00000599575 ACAP3Q96P50 834 aa18.08■□□□□ 0.48
SHKBP1-219ENST00000599575 CASD1Q96PB1 797 aa18.08■□□□□ 0.48
SHKBP1-219ENST00000599575 MSTO1Q9BUK6 570 aa18.08■□□□□ 0.48
SHKBP1-219ENST00000599575 TYW1Q9NV66 732 aaKnown RBP18.08■□□□□ 0.48
SHKBP1-219ENST00000599575 AGO2Q9UKV8 859 aaKnown RBP18.08■□□□□ 0.48
SHKBP1-219ENST00000599575 USP20Q9Y2K6 914 aa18.08■□□□□ 0.48
SHKBP1-219ENST00000599575 GRXCR1A8MXD5 290 aa18.07■□□□□ 0.48
SHKBP1-219ENST00000599575 FGFR1P11362 822 aa18.07■□□□□ 0.48
SHKBP1-219ENST00000599575 HOXD13P35453 343 aa18.07■□□□□ 0.48
SHKBP1-219ENST00000599575 CLLU1OSQ5K130 101 aa18.07■□□□□ 0.48
SHKBP1-219ENST00000599575 GLIS3Q8NEA6 775 aa18.07■□□□□ 0.48
SHKBP1-219ENST00000599575 ZBTB45Q96K62 511 aaPredicted RBP18.07■□□□□ 0.48
SHKBP1-219ENST00000599575 AAASQ9NRG9 546 aa18.07■□□□□ 0.48
SHKBP1-219ENST00000599575 RNF19AQ9NV58 838 aa18.07■□□□□ 0.48
SHKBP1-219ENST00000599575 PARP2Q9UGN5 583 aa18.07■□□□□ 0.48
SHKBP1-219ENST00000599575 ARL5CA6NH57 179 aa18.06■□□□□ 0.48
SHKBP1-219ENST00000599575 TBKBP1A7MCY6 615 aa18.06■□□□□ 0.48
SHKBP1-219ENST00000599575 ANKRD63C9JTQ0 380 aa18.06■□□□□ 0.48
SHKBP1-219ENST00000599575 FAM189A1O60320 539 aa18.06■□□□□ 0.48
SHKBP1-219ENST00000599575 RECQL4O94761 1208 aa18.06■□□□□ 0.48
SHKBP1-219ENST00000599575 CA3P07451 260 aa18.06■□□□□ 0.48
SHKBP1-219ENST00000599575 ADSSP30520 456 aa18.06■□□□□ 0.48
SHKBP1-219ENST00000599575 RABGGTBP53611 331 aa18.06■□□□□ 0.48
SHKBP1-219ENST00000599575 MORC3Q14149 939 aa18.06■□□□□ 0.48
SHKBP1-219ENST00000599575 CAMK4Q16566 473 aa18.06■□□□□ 0.48
SHKBP1-219ENST00000599575 NFIL3Q16649 462 aa18.06■□□□□ 0.48
SHKBP1-219ENST00000599575 SKOR2Q2VWA4 1001 aaPredicted RBP18.06■□□□□ 0.48
SHKBP1-219ENST00000599575 XKR4Q5GH76 650 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms