RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 TMEM169Q96HH4 297 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 CDCA3Q99618 268 aaPredicted RBP13.41□□□□□ -0.26
LIG1-217ENST00000599165 S1PR5Q9H228 398 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 EPHX3Q9H6B9 360 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 PTPRHQ9HD43 1115 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 FOXD4L1Q9NU39 408 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 KLK14Q9P0G3 267 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 KANSL3Q9P2N6 904 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 CDH22Q9UJ99 828 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 GIT1Q9Y2X7 761 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 IRAK3Q9Y616 596 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 PDCD11Q14690 1871 aaKnown RBP13.41□□□□□ -0.26
LIG1-217ENST00000599165 ZMYM2Q9UBW7 1377 aa13.41□□□□□ -0.26
LIG1-217ENST00000599165 CITO14578 2027 aa13.4□□□□□ -0.26
LIG1-217ENST00000599165 C2orf16Q68DN1 1984 aa13.4□□□□□ -0.26
LIG1-217ENST00000599165 NPHP3-ACAD11A0A0J9YXS1 232 aa13.4□□□□□ -0.26
LIG1-217ENST00000599165 SFI1A8K8P3 1242 aa13.4□□□□□ -0.26
LIG1-217ENST00000599165 PTGESO14684 152 aa13.4□□□□□ -0.26
LIG1-217ENST00000599165 MEFVO15553 781 aaPredicted RBP13.4□□□□□ -0.26
LIG1-217ENST00000599165 SMC1AQ14683 1233 aaKnown RBP13.4□□□□□ -0.26
LIG1-217ENST00000599165 PPP2R5AQ15172 486 aa13.4□□□□□ -0.26
LIG1-217ENST00000599165 PTPN14Q15678 1187 aa13.4□□□□□ -0.26
LIG1-217ENST00000599165 ZRSR1Q15695 479 aaKnown RBP13.4□□□□□ -0.26
LIG1-217ENST00000599165 TAS1R1Q7RTX1 841 aa13.4□□□□□ -0.26
LIG1-217ENST00000599165 CABP7Q86V35 215 aa13.4□□□□□ -0.26
LIG1-217ENST00000599165 GJD3Q8N144 294 aa13.4□□□□□ -0.26
LIG1-217ENST00000599165 SUSD6Q92537 303 aa13.4□□□□□ -0.26
LIG1-217ENST00000599165 SNX21Q969T3 373 aa13.4□□□□□ -0.26
LIG1-217ENST00000599165 PAAF1Q9BRP4 392 aa13.4□□□□□ -0.26
LIG1-217ENST00000599165 UBN1Q9NPG3 1134 aa13.4□□□□□ -0.26
LIG1-217ENST00000599165 C11orf16Q9NQ32 467 aa13.4□□□□□ -0.26
LIG1-217ENST00000599165 SNTG2Q9NY99 539 aa13.4□□□□□ -0.26
LIG1-217ENST00000599165 FBXO2Q9UK22 296 aaPredicted RBP13.4□□□□□ -0.26
LIG1-217ENST00000599165 PRG3Q9Y2Y8 225 aaPredicted RBP13.4□□□□□ -0.26
LIG1-217ENST00000599165 USP15Q9Y4E8 981 aaPredicted RBP13.4□□□□□ -0.26
LIG1-217ENST00000599165 HCFC2Q9Y5Z7 792 aa13.4□□□□□ -0.26
LIG1-217ENST00000599165 DENND4AQ7Z401 1863 aa13.4□□□□□ -0.26
LIG1-217ENST00000599165 N4BP3O15049 544 aa13.39□□□□□ -0.27
LIG1-217ENST00000599165 RECQL4O94761 1208 aa13.39□□□□□ -0.27
LIG1-217ENST00000599165 CXCL14O95715 111 aa13.39□□□□□ -0.27
LIG1-217ENST00000599165 PLA2G4BP0C869 781 aa13.39□□□□□ -0.27
LIG1-217ENST00000599165 LIG1P18858 919 aa13.39□□□□□ -0.27
LIG1-217ENST00000599165 IGFBP6P24592 240 aaPredicted RBP13.39□□□□□ -0.27
LIG1-217ENST00000599165 CACNB1Q02641 598 aaPredicted RBP13.39□□□□□ -0.27
LIG1-217ENST00000599165 NCBP1Q09161 790 aaKnown RBP13.39□□□□□ -0.27
LIG1-217ENST00000599165 RAD51AP2Q09MP3 1159 aa13.39□□□□□ -0.27
LIG1-217ENST00000599165 KARSQ15046 597 aaKnown RBP13.39□□□□□ -0.27
LIG1-217ENST00000599165 ANKRD54Q6NXT1 300 aa13.39□□□□□ -0.27
LIG1-217ENST00000599165 LLGL2Q6P1M3 1020 aa13.39□□□□□ -0.27
LIG1-217ENST00000599165 ADHFE1Q8IWW8 467 aa13.39□□□□□ -0.27
LIG1-217ENST00000599165 CEP120Q8N960 986 aa13.39□□□□□ -0.27
LIG1-217ENST00000599165 SLC22A17Q8WUG5 538 aa13.39□□□□□ -0.27
LIG1-217ENST00000599165 RABGGTAQ92696 567 aa13.39□□□□□ -0.27
LIG1-217ENST00000599165 AK8Q96MA6 479 aa13.39□□□□□ -0.27
LIG1-217ENST00000599165 NTPCRQ9BSD7 190 aaKnown RBP13.39□□□□□ -0.27
LIG1-217ENST00000599165 TRIM6Q9C030 488 aaPredicted RBP13.39□□□□□ -0.27
LIG1-217ENST00000599165 FAN1Q9Y2M0 1017 aa13.39□□□□□ -0.27
LIG1-217ENST00000599165 PHLPP2Q6ZVD8 1323 aa13.39□□□□□ -0.27
LIG1-217ENST00000599165 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.38□□□□□ -0.27
LIG1-217ENST00000599165 SLC16A4O15374 487 aa13.38□□□□□ -0.27
LIG1-217ENST00000599165 ALDH2P05091 517 aa13.38□□□□□ -0.27
LIG1-217ENST00000599165 PLCG1P19174 1290 aa13.38□□□□□ -0.27
LIG1-217ENST00000599165 PDCP20941 246 aa13.38□□□□□ -0.27
LIG1-217ENST00000599165 PROZP22891 400 aa13.38□□□□□ -0.27
LIG1-217ENST00000599165 EFNA5P52803 228 aa13.38□□□□□ -0.27
LIG1-217ENST00000599165 GRIK3Q13003 919 aa13.38□□□□□ -0.27
LIG1-217ENST00000599165 ATF7IP2Q5U623 682 aa13.38□□□□□ -0.27
LIG1-217ENST00000599165 KANK3Q6NY19 840 aa13.38□□□□□ -0.27
LIG1-217ENST00000599165 KCTD17Q8N5Z5 321 aa13.38□□□□□ -0.27
LIG1-217ENST00000599165 TMEM161BQ8NDZ6 487 aa13.38□□□□□ -0.27
LIG1-217ENST00000599165 IFT74Q96LB3 600 aa13.38□□□□□ -0.27
LIG1-217ENST00000599165 USP28Q96RU2 1077 aa13.38□□□□□ -0.27
LIG1-217ENST00000599165 ACO2Q99798 780 aaKnown RBP13.38□□□□□ -0.27
LIG1-217ENST00000599165 NT5C3AQ9H0P0 336 aa13.38□□□□□ -0.27
LIG1-217ENST00000599165 CDT1Q9H211 546 aa13.38□□□□□ -0.27
LIG1-217ENST00000599165 TMEM134Q9H6X4 195 aa13.38□□□□□ -0.27
LIG1-217ENST00000599165 PRKAG3Q9UGI9 489 aa13.38□□□□□ -0.27
LIG1-217ENST00000599165 PARP2Q9UGN5 583 aa13.38□□□□□ -0.27
LIG1-217ENST00000599165 TNFSF13BQ9Y275 285 aa13.38□□□□□ -0.27
LIG1-217ENST00000599165 MTCL1Q9Y4B5 1905 aaKnown RBP13.38□□□□□ -0.27
LIG1-217ENST00000599165 TECTAO75443 2155 aa13.38□□□□□ -0.27
LIG1-217ENST00000599165 CCDC169A6NNP5 214 aa13.37□□□□□ -0.27
LIG1-217ENST00000599165 K7ERI5 159 aa13.37□□□□□ -0.27
LIG1-217ENST00000599165 SLC26A4O43511 780 aa13.37□□□□□ -0.27
LIG1-217ENST00000599165 BMP15O95972 392 aa13.37□□□□□ -0.27
LIG1-217ENST00000599165 SOD2P04179 222 aa13.37□□□□□ -0.27
LIG1-217ENST00000599165 SSBP05455 408 aaKnown RBP eCLIP13.37□□□□□ -0.27
LIG1-217ENST00000599165 CNPP09543 421 aaKnown RBP13.37□□□□□ -0.27
LIG1-217ENST00000599165 PLS3P13797 630 aa13.37□□□□□ -0.27
LIG1-217ENST00000599165 EPCAMP16422 314 aa13.37□□□□□ -0.27
LIG1-217ENST00000599165 MARCKSP29966 332 aaPredicted RBP13.37□□□□□ -0.27
LIG1-217ENST00000599165 LONP1P36776 959 aaKnown RBP13.37□□□□□ -0.27
LIG1-217ENST00000599165 OR1G1P47890 313 aa13.37□□□□□ -0.27
LIG1-217ENST00000599165 DMP1Q13316 513 aaPredicted RBP13.37□□□□□ -0.27
LIG1-217ENST00000599165 SPECC1Q5M775 1068 aa13.37□□□□□ -0.27
LIG1-217ENST00000599165 KIAA0319Q5VV43 1072 aa13.37□□□□□ -0.27
LIG1-217ENST00000599165 SPIRE2Q8WWL2 714 aa13.37□□□□□ -0.27
LIG1-217ENST00000599165 KCNN1Q92952 543 aa13.37□□□□□ -0.27
LIG1-217ENST00000599165 EPSTI1Q96J88 318 aa13.37□□□□□ -0.27
LIG1-217ENST00000599165 B3GALT6Q96L58 329 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms