RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	PLXNA3	P51805	1871 aa		11.69	□□□□□ -0.54
LSM4-205	ENST00000597776	MYO15A	Q9UKN7	3530 aa		11.69	□□□□□ -0.54
LSM4-205	ENST00000597776	C2orf16	Q68DN1	1984 aa		11.68	□□□□□ -0.54
LSM4-205	ENST00000597776	MYO10	Q9HD67	2058 aa		11.68	□□□□□ -0.54
LSM4-205	ENST00000597776	LRRIQ4	A6NIV6	560 aa		11.68	□□□□□ -0.54
LSM4-205	ENST00000597776	TTLL13P	A6NNM8	815 aa		11.68	□□□□□ -0.54
LSM4-205	ENST00000597776		H0Y858	1186 aa		11.68	□□□□□ -0.54
LSM4-205	ENST00000597776	MED24	O75448	989 aa		11.68	□□□□□ -0.54
LSM4-205	ENST00000597776	RFPL2	O75678	378 aa		11.68	□□□□□ -0.54
LSM4-205	ENST00000597776	ADH1A	P07327	375 aa		11.68	□□□□□ -0.54
LSM4-205	ENST00000597776	SPATA31D3	P0C874	917 aa		11.68	□□□□□ -0.54
LSM4-205	ENST00000597776	GLUD2	P49448	558 aa		11.68	□□□□□ -0.54
LSM4-205	ENST00000597776	KIAA0319	Q5VV43	1072 aa		11.68	□□□□□ -0.54
LSM4-205	ENST00000597776	SLC27A1	Q6PCB7	646 aa		11.68	□□□□□ -0.54
LSM4-205	ENST00000597776	SPATA31D4	Q6ZUB0	917 aa		11.68	□□□□□ -0.54
LSM4-205	ENST00000597776	OTOP3	Q7RTS5	596 aa		11.68	□□□□□ -0.54
LSM4-205	ENST00000597776	HACE1	Q8IYU2	909 aa		11.68	□□□□□ -0.54
LSM4-205	ENST00000597776	PLCD3	Q8N3E9	789 aa		11.68	□□□□□ -0.54
LSM4-205	ENST00000597776	GSTCD	Q8NEC7	633 aa		11.68	□□□□□ -0.54
LSM4-205	ENST00000597776	ACSF2	Q96CM8	615 aa	Predicted RBP	11.68	□□□□□ -0.54
LSM4-205	ENST00000597776	NFKBIZ	Q9BYH8	718 aa		11.68	□□□□□ -0.54
LSM4-205	ENST00000597776	GPR62	Q9BZJ7	368 aa		11.68	□□□□□ -0.54
LSM4-205	ENST00000597776	CCDC195	A0A1B0GUA6	201 aa		11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	GALR2	O43603	387 aa	Predicted RBP	11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	N4BP1	O75113	896 aa	Known RBP	11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	GLUD1	P00367	558 aa		11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	DSG1	Q02413	1049 aa		11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	FUT10	Q6P4F1	479 aa		11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	POTEG	Q6S5H5	508 aa		11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	C15orf39	Q6ZRI6	1047 aa		11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	CATSPER3	Q86XQ3	398 aa		11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	PALB2	Q86YC2	1186 aa		11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	GLYCTK	Q8IVS8	523 aa		11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	CMAS	Q8NFW8	434 aa	Predicted RBP	11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	ATOH1	Q92858	354 aa	Predicted RBP	11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	PAAF1	Q9BRP4	392 aa		11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	COLEC11	Q9BWP8	271 aa		11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	RXFP1	Q9HBX9	757 aa		11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	PARP2	Q9UGN5	583 aa		11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	SSX2IP	Q9Y2D8	614 aa		11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	USP20	Q9Y2K6	914 aa		11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	CFAP54	Q96N23	3096 aa		11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	VPS13A	Q96RL7	3174 aa		11.67	□□□□□ -0.54
LSM4-205	ENST00000597776	TDRD15	B5MCY1	1934 aa	Known RBP	11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	CACNA1H	O95180	2353 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776		A0A1B0GUA9	196 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	GFRA3	O60609	400 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	NR1I2	O75469	434 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	SEC24B	O95487	1268 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	XRCC6	P12956	609 aa	Known RBP eCLIP	11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	RPL17	P18621	184 aa	Known RBP	11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	GRIK3	Q13003	919 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	TDG	Q13569	410 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	ZNF174	Q15697	407 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	CDCA2	Q69YH5	1023 aa	Predicted RBP	11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	CWF19L1	Q69YN2	538 aa	Known RBP	11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	ASTL	Q6HA08	431 aa	Predicted RBP	11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	CCDC83	Q8IWF9	413 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	MCPH1	Q8NEM0	835 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	FLCN	Q8NFG4	579 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	HASPIN	Q8TF76	798 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	RSAD2	Q8WXG1	361 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	RIN2	Q8WYP3	895 aa	Predicted RBP	11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	BSND	Q8WZ55	320 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	ZNF707	Q96C28	371 aa	Predicted RBP	11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	CXCL16	Q9H2A7	254 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	MFSD1	Q9H3U5	465 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	KCNK12	Q9HB15	430 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	TUFT1	Q9NNX1	390 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	CHST7	Q9NS84	486 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	PPP4R2	Q9NY27	417 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	ADAM28	Q9UKQ2	775 aa		11.66	□□□□□ -0.54
LSM4-205	ENST00000597776	CLUH	O75153	1309 aa		11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	CASTOR2	A6NHX0	329 aa		11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	TGM5	O43548	720 aa		11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	NARS	O43776	548 aa	Known RBP	11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	EDN1	P05305	212 aa		11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	LIG1	P18858	919 aa		11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	GBP2	P32456	591 aa	Predicted RBP	11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	SAFB	Q15424	915 aa	Known RBP eCLIP	11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	USP41	Q3LFD5	358 aa		11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	PRSS55	Q6UWB4	352 aa	Predicted RBP	11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	PPP4R3CP	Q6ZMV5	832 aa		11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	ZBTB8OS	Q8IWT0	167 aa		11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	SMG7	Q92540	1137 aa	Known RBP	11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	MYADM	Q96S97	322 aa		11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	FZD8	Q9H461	694 aa		11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	PDZD7	Q9H5P4	517 aa		11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	POLD4	Q9HCU8	107 aa		11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	WDR6	Q9NNW5	1121 aa	Known RBP	11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	PRMT7	Q9NVM4	692 aa	Predicted RBP	11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	SNTG2	Q9NY99	539 aa		11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	DUSP12	Q9UNI6	340 aa		11.65	□□□□□ -0.54
LSM4-205	ENST00000597776	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	11.65	□□□□□ -0.55
LSM4-205	ENST00000597776	ARHGEF35	A5YM69	484 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	PTGES	O14684	152 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	PI15	O43692	258 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	TADA2A	O75478	443 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	RECQL4	O94761	1208 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	KIF4A	O95239	1232 aa		11.64	□□□□□ -0.55

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