RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 FAM26DQ5JW98 314 aa16.6■□□□□ 0.25
TRIM28-209ENST00000597423 TCERG1LQ5VWI1 586 aa16.6■□□□□ 0.25
TRIM28-209ENST00000597423 NOTUMQ6P988 496 aa16.6■□□□□ 0.25
TRIM28-209ENST00000597423 ZBTB33Q86T24 672 aa16.6■□□□□ 0.25
TRIM28-209ENST00000597423 CAGE1Q8TC20 777 aa16.6■□□□□ 0.25
TRIM28-209ENST00000597423 TMC2Q8TDI7 906 aa16.6■□□□□ 0.25
TRIM28-209ENST00000597423 BORCS6Q96GS4 357 aa16.6■□□□□ 0.25
TRIM28-209ENST00000597423 MFSD14AQ96MC6 490 aa16.6■□□□□ 0.25
TRIM28-209ENST00000597423 TRPV6Q9H1D0 765 aa16.6■□□□□ 0.25
TRIM28-209ENST00000597423 CDHR5Q9HBB8 845 aa16.6■□□□□ 0.25
TRIM28-209ENST00000597423 PTPRHQ9HD43 1115 aa16.6■□□□□ 0.25
TRIM28-209ENST00000597423 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.6■□□□□ 0.253e-9■□□□□ 10.3
TRIM28-209ENST00000597423 A0A1W2PQC6 194 aa16.59■□□□□ 0.25
TRIM28-209ENST00000597423 GOLGA8IPA6NC78 632 aa16.59■□□□□ 0.25
TRIM28-209ENST00000597423 GOLGA8JA6NMD2 632 aa16.59■□□□□ 0.25
TRIM28-209ENST00000597423 DCDC2CA8MYV0 355 aa16.59■□□□□ 0.25
TRIM28-209ENST00000597423 B4GALT4O60513 344 aa16.59■□□□□ 0.25
TRIM28-209ENST00000597423 N4BP1O75113 896 aaKnown RBP16.59■□□□□ 0.25
TRIM28-209ENST00000597423 CSDE1O75534 798 aaKnown RBP16.59■□□□□ 0.25
TRIM28-209ENST00000597423 RPS6KA5O75582 802 aa16.59■□□□□ 0.25
TRIM28-209ENST00000597423 PTMAP06454 111 aaKnown RBP16.59■□□□□ 0.25
TRIM28-209ENST00000597423 IQCF3P0C7M6 154 aa16.59■□□□□ 0.25
TRIM28-209ENST00000597423 ARF4P18085 180 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-209ENST00000597423 PROZP22891 400 aa16.59■□□□□ 0.25
TRIM28-209ENST00000597423 KCNH2Q12809 1159 aa16.59■□□□□ 0.25
TRIM28-209ENST00000597423 BFSP1Q12934 665 aa16.59■□□□□ 0.25
TRIM28-209ENST00000597423 DCAF17Q5H9S7 520 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-209ENST00000597423 SPECC1LQ69YQ0 1117 aa16.59■□□□□ 0.25
TRIM28-209ENST00000597423 SLC39A5Q6ZMH5 540 aa16.59■□□□□ 0.25
TRIM28-209ENST00000597423 IQCDQ96DY2 449 aa16.59■□□□□ 0.25
TRIM28-209ENST00000597423 SAAL1Q96ER3 474 aa16.59■□□□□ 0.25
TRIM28-209ENST00000597423 PDLIM2Q96JY6 352 aa16.59■□□□□ 0.25
TRIM28-209ENST00000597423 ZBTB45Q96K62 511 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-209ENST00000597423 PCMTD1Q96MG8 357 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-209ENST00000597423 FNBP1Q96RU3 617 aa16.59■□□□□ 0.25
TRIM28-209ENST00000597423 NUP58Q9BVL2 599 aa16.59■□□□□ 0.25
TRIM28-209ENST00000597423 CHST12Q9NRB3 414 aa16.59■□□□□ 0.25
TRIM28-209ENST00000597423 TULP1O00294 542 aaPredicted RBP16.58■□□□□ 0.24
TRIM28-209ENST00000597423 B4GALT5O43286 388 aa16.58■□□□□ 0.24
TRIM28-209ENST00000597423 CHRNA1P02708 482 aa16.58■□□□□ 0.24
TRIM28-209ENST00000597423 CLTAP09496 248 aa16.58■□□□□ 0.24
TRIM28-209ENST00000597423 HARSP12081 509 aaKnown RBP16.58■□□□□ 0.24
TRIM28-209ENST00000597423 GTF2H1P32780 548 aa16.58■□□□□ 0.24
TRIM28-209ENST00000597423 MCCD1P59942 119 aaPredicted RBP16.58■□□□□ 0.24
TRIM28-209ENST00000597423 CYP24A1Q07973 514 aa16.58■□□□□ 0.24
TRIM28-209ENST00000597423 MIIPQ5JXC2 388 aa16.58■□□□□ 0.24
TRIM28-209ENST00000597423 C1orf53Q5VUE5 145 aa16.58■□□□□ 0.24
TRIM28-209ENST00000597423 SLC27A1Q6PCB7 646 aa16.58■□□□□ 0.24
TRIM28-209ENST00000597423 PPFIBP1Q86W92 1011 aa16.58■□□□□ 0.24
TRIM28-209ENST00000597423 VSTM4Q8IW00 320 aa16.58■□□□□ 0.24
TRIM28-209ENST00000597423 TOX2Q96NM4 488 aa16.58■□□□□ 0.24
TRIM28-209ENST00000597423 TRIM6Q9C030 488 aaPredicted RBP16.58■□□□□ 0.24
TRIM28-209ENST00000597423 AGPAT5Q9NUQ2 364 aa16.58■□□□□ 0.24
TRIM28-209ENST00000597423 RBAKQ9NYW8 714 aaPredicted RBP16.58■□□□□ 0.24
TRIM28-209ENST00000597423 USP20Q9Y2K6 914 aa16.58■□□□□ 0.24
TRIM28-209ENST00000597423 P4HA2O15460 535 aa16.57■□□□□ 0.24
TRIM28-209ENST00000597423 ZSCAN20P17040 1043 aaPredicted RBP16.57■□□□□ 0.24
TRIM28-209ENST00000597423 ACOT2P49753 483 aa16.57■□□□□ 0.24
TRIM28-209ENST00000597423 AP3M2P53677 418 aa16.57■□□□□ 0.24
TRIM28-209ENST00000597423 MGAT3Q09327 533 aa16.57■□□□□ 0.24
TRIM28-209ENST00000597423 TRIM14Q14142 442 aa16.57■□□□□ 0.24
TRIM28-209ENST00000597423 PSMD6Q15008 389 aa16.57■□□□□ 0.24
TRIM28-209ENST00000597423 TRIM71Q2Q1W2 868 aaKnown RBP16.57■□□□□ 0.24
TRIM28-209ENST00000597423 ANKRD33Q7Z3H0 272 aa16.57■□□□□ 0.24
TRIM28-209ENST00000597423 TMC6Q7Z403 805 aa16.57■□□□□ 0.24
TRIM28-209ENST00000597423 CBWD2Q8IUF1 395 aa16.57■□□□□ 0.24
TRIM28-209ENST00000597423 HACE1Q8IYU2 909 aa16.57■□□□□ 0.24
TRIM28-209ENST00000597423 SLC35C1Q96A29 364 aa16.57■□□□□ 0.24
TRIM28-209ENST00000597423 CCDC127Q96BQ5 260 aa16.57■□□□□ 0.24
TRIM28-209ENST00000597423 CPB2Q96IY4 423 aa16.57■□□□□ 0.24
TRIM28-209ENST00000597423 ERGIC2Q96RQ1 377 aa16.57■□□□□ 0.24
TRIM28-209ENST00000597423 PDZD7Q9H5P4 517 aa16.57■□□□□ 0.24
TRIM28-209ENST00000597423 C11orf49Q9H6J7 331 aa16.57■□□□□ 0.24
TRIM28-209ENST00000597423 RPF1Q9H9Y2 349 aaKnown RBP16.57■□□□□ 0.24
TRIM28-209ENST00000597423 ITIH6Q6UXX5 1313 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 GTPBP10A4D1E9 387 aaKnown RBP16.56■□□□□ 0.24
TRIM28-209ENST00000597423 TTLL13PA6NNM8 815 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 TEX33O43247 280 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 IL18RAPO95256 599 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 PARNO95453 639 aaKnown RBP16.56■□□□□ 0.24
TRIM28-209ENST00000597423 EDN1P05305 212 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 CTSHP09668 335 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 CKBP12277 381 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 FGFR4P22455 802 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 HOXA11P31270 313 aaPredicted RBP16.56■□□□□ 0.24
TRIM28-209ENST00000597423 GSDMDP57764 484 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 NFX1Q12986 1120 aaKnown RBP16.56■□□□□ 0.24
TRIM28-209ENST00000597423 PAK2Q13177 524 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 EEF1DP3Q658K8 133 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 GBP6Q6ZN66 633 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 NECAB2Q7Z6G3 386 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 CD302Q8IX05 232 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 FAM126BQ8IXS8 530 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 THNSL1Q8IYQ7 743 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 SPC24Q8NBT2 197 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 PARD3BQ8TEW8 1205 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 CCDC94Q9BW85 323 aaPredicted RBP16.56■□□□□ 0.24
TRIM28-209ENST00000597423 CDT1Q9H211 546 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 ST3GAL5Q9UNP4 418 aa16.56■□□□□ 0.24
TRIM28-209ENST00000597423 PIN4Q9Y237 131 aaKnown RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms