RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.37■□□□□ 0.21
UPF1-204ENST00000596842 RPTORQ8N122 1335 aa16.37■□□□□ 0.21
UPF1-204ENST00000596842 RREB1Q92766 1687 aa16.37■□□□□ 0.21
UPF1-204ENST00000596842 RARAP10276 462 aa16.37■□□□□ 0.21
UPF1-204ENST00000596842 INTUQ9ULD6 942 aa16.37■□□□□ 0.21
UPF1-204ENST00000596842 MYCLP12524 364 aaPredicted RBP16.37■□□□□ 0.21
UPF1-204ENST00000596842 MTM1Q13496 603 aa16.37■□□□□ 0.21
UPF1-204ENST00000596842 CEP55Q53EZ4 464 aa16.37■□□□□ 0.21
UPF1-204ENST00000596842 SP8Q8IXZ3 490 aa16.37■□□□□ 0.21
UPF1-204ENST00000596842 LARSQ9P2J5 1176 aaKnown RBP16.37■□□□□ 0.21
UPF1-204ENST00000596842 PLIN4Q96Q06 1357 aa16.37■□□□□ 0.21
UPF1-204ENST00000596842 IRF6O14896 467 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 ECEL1O95672 775 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 ZBTB48P10074 688 aaPredicted RBP16.36■□□□□ 0.21
UPF1-204ENST00000596842 CHRNA3P32297 505 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 ADCY8P40145 1251 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 SOX10P56693 466 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 MYO1EQ12965 1108 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 DHX34Q14147 1143 aaKnown RBP16.36■□□□□ 0.21
UPF1-204ENST00000596842 C6orf118Q5T5N4 469 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 NOP9Q86U38 636 aaKnown RBP16.36■□□□□ 0.21
UPF1-204ENST00000596842 THAP12O43422 761 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 NPEPPSP55786 919 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 KRT17Q04695 432 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 RRP1BQ14684 758 aaKnown RBP16.36■□□□□ 0.21
UPF1-204ENST00000596842 SRRM1Q8IYB3 904 aaKnown RBP16.36■□□□□ 0.21
UPF1-204ENST00000596842 C9orf72Q96LT7 481 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 TEKT3Q9BXF9 490 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 EPB41L4BQ9H329 900 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 KLHL11Q9NVR0 708 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 GRHL1Q9NZI5 618 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 ANAPC7Q9UJX3 599 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 PASKQ96RG2 1323 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 TMEM120BA0PK00 339 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 FAM187AA6NFU0 413 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 RBBP5Q15291 538 aaKnown RBP16.36■□□□□ 0.21
UPF1-204ENST00000596842 GSTA5Q7RTV2 222 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 CBWD2Q8IUF1 395 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 PASD1Q8IV76 773 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 CCT6BQ92526 530 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 BORCS6Q96GS4 357 aa16.36■□□□□ 0.21
UPF1-204ENST00000596842 COL16A1Q07092 1604 aaPredicted RBP16.36■□□□□ 0.21
UPF1-204ENST00000596842 GTPBP10A4D1E9 387 aaKnown RBP16.35■□□□□ 0.21
UPF1-204ENST00000596842 UBOX5O94941 541 aa16.35■□□□□ 0.21
UPF1-204ENST00000596842 GH1P01241 217 aa16.35■□□□□ 0.21
UPF1-204ENST00000596842 PRCCQ92733 491 aaPredicted RBP16.35■□□□□ 0.21
UPF1-204ENST00000596842 NSRP1Q9H0G5 558 aaKnown RBP16.35■□□□□ 0.21
UPF1-204ENST00000596842 CDC42EP4Q9H3Q1 356 aaKnown RBP16.35■□□□□ 0.21
UPF1-204ENST00000596842 RIPK2O43353 540 aa16.35■□□□□ 0.21
UPF1-204ENST00000596842 TOM1O60784 492 aa16.35■□□□□ 0.21
UPF1-204ENST00000596842 COILP38432 576 aaPredicted RBP16.35■□□□□ 0.21
UPF1-204ENST00000596842 ADCY2Q08462 1091 aa16.35■□□□□ 0.21
UPF1-204ENST00000596842 BMT2Q1RMZ1 405 aa16.35■□□□□ 0.21
UPF1-204ENST00000596842 KAZNQ674X7 775 aa16.35■□□□□ 0.21
UPF1-204ENST00000596842 PLA2G4FQ68DD2 849 aa16.35■□□□□ 0.21
UPF1-204ENST00000596842 TAOK1Q7L7X3 1001 aa16.35■□□□□ 0.21
UPF1-204ENST00000596842 TRPM8Q7Z2W7 1104 aa16.35■□□□□ 0.21
UPF1-204ENST00000596842 HSPBP1Q9NZL4 362 aa16.35■□□□□ 0.21
UPF1-204ENST00000596842 IGLV3-22A0A075B6J6 115 aa16.35■□□□□ 0.21
UPF1-204ENST00000596842 EIF3DO15371 548 aaKnown RBP eCLIP16.35■□□□□ 0.21
UPF1-204ENST00000596842 CHKAP35790 457 aa16.35■□□□□ 0.21
UPF1-204ENST00000596842 ACCSLQ4AC99 568 aa16.35■□□□□ 0.21
UPF1-204ENST00000596842 SLC13A5Q86YT5 568 aaPredicted RBP16.35■□□□□ 0.21
UPF1-204ENST00000596842 TLCD1Q96CP7 247 aa16.35■□□□□ 0.21
UPF1-204ENST00000596842 WDR11Q9BZH6 1224 aa16.35■□□□□ 0.21
UPF1-204ENST00000596842 TRIM33Q9UPN9 1127 aa16.35■□□□□ 0.21
UPF1-204ENST00000596842 KCNJ2P63252 427 aa16.34■□□□□ 0.21
UPF1-204ENST00000596842 CPA5Q8WXQ8 436 aa16.34■□□□□ 0.21
UPF1-204ENST00000596842 MBOAT7Q96N66 472 aa16.34■□□□□ 0.21
UPF1-204ENST00000596842 NOD2Q9HC29 1040 aa16.34■□□□□ 0.21
UPF1-204ENST00000596842 CHST7Q9NS84 486 aa16.34■□□□□ 0.21
UPF1-204ENST00000596842 STX2P32856 288 aa16.34■□□□□ 0.21
UPF1-204ENST00000596842 EMC10Q5UCC4 262 aa16.34■□□□□ 0.21
UPF1-204ENST00000596842 TRIM68Q6AZZ1 485 aa16.34■□□□□ 0.21
UPF1-204ENST00000596842 MOXD1Q6UVY6 613 aa16.34■□□□□ 0.21
UPF1-204ENST00000596842 HHIPL2Q6UWX4 724 aa16.34■□□□□ 0.21
UPF1-204ENST00000596842 FAM228AQ86W67 206 aa16.34■□□□□ 0.21
UPF1-204ENST00000596842 EIF1ADQ8N9N8 165 aaKnown RBP16.34■□□□□ 0.21
UPF1-204ENST00000596842 LBHD1Q9BQE6 289 aaPredicted RBP16.34■□□□□ 0.21
UPF1-204ENST00000596842 NCANO14594 1321 aa16.34■□□□□ 0.21
UPF1-204ENST00000596842 PSMD10O75832 226 aa16.34■□□□□ 0.21
UPF1-204ENST00000596842 MAPK4P31152 587 aa16.34■□□□□ 0.21
UPF1-204ENST00000596842 AUHQ13825 339 aaKnown RBP16.34■□□□□ 0.21
UPF1-204ENST00000596842 GNPTABQ3T906 1256 aa16.34■□□□□ 0.21
UPF1-204ENST00000596842 XXYLT1Q8NBI6 393 aa16.34■□□□□ 0.21
UPF1-204ENST00000596842 C1orf131Q8NDD1 294 aaKnown RBP16.34■□□□□ 0.21
UPF1-204ENST00000596842 STAMBPL1Q96FJ0 436 aa16.34■□□□□ 0.21
UPF1-204ENST00000596842 BICD1Q96G01 975 aa16.34■□□□□ 0.21
UPF1-204ENST00000596842 PRMT6Q96LA8 375 aaPredicted RBP16.34■□□□□ 0.21
UPF1-204ENST00000596842 HOMER3Q9NSC5 361 aa16.34■□□□□ 0.21
UPF1-204ENST00000596842 MYH11P35749 1972 aa16.34■□□□□ 0.21
UPF1-204ENST00000596842 PODXLO00592 558 aa16.33■□□□□ 0.21
UPF1-204ENST00000596842 RWDD2BP57060 319 aa16.33■□□□□ 0.21
UPF1-204ENST00000596842 VPS72Q15906 364 aa16.33■□□□□ 0.21
UPF1-204ENST00000596842 PPP2R5EQ16537 467 aa16.33■□□□□ 0.21
UPF1-204ENST00000596842 ARMC9Q7Z3E5 817 aa16.33■□□□□ 0.21
UPF1-204ENST00000596842 HAUS6Q7Z4H7 955 aa16.33■□□□□ 0.21
UPF1-204ENST00000596842 CERKQ8TCT0 537 aa16.33■□□□□ 0.21
UPF1-204ENST00000596842 KLHL29Q96CT2 875 aa16.33■□□□□ 0.21
UPF1-204ENST00000596842 AGBL1Q96MI9 1066 aa16.33■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms