RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	KRT17	Q04695	432 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	SLC29A2	Q14542	456 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	UBE2S	Q16763	222 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	ABCB5	Q2M3G0	1257 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	DNAL1	Q4LDG9	190 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	SLFN12L	Q6IEE8	588 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	NT5DC3	Q86UY8	548 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	SLC13A5	Q86YT5	568 aa	Predicted RBP	3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	LRRC34	Q8IZ02	419 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	SCYL3	Q8IZE3	742 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	SYNE4	Q8N205	404 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	HDAC7	Q8WUI4	952 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	CDKL2	Q92772	493 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	ATP6V0A1	Q93050	837 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	MTMR9	Q96QG7	549 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	DCLRE1B	Q9H816	532 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	NYAP2	Q9P242	653 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	ANKFY1	Q9P2R3	1169 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	IP6K2	Q9UHH9	426 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	CCNL1	Q9UK58	526 aa	Predicted RBP	3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	STRIP2	Q9ULQ0	834 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	ALG6	Q9Y672	507 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	MYH6	P13533	1939 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	CCDC189	A1A4V9	331 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	POC1B-GALNT4	F8VUJ3	575 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	UBE2Q2L	H0YL09	131 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	IGF2BP3	O00425	579 aa	Known RBP eCLIP	3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	MED7	O43513	233 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	PSTPIP1	O43586	416 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	CREB3	O43889	395 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	DIAPH2	O60879	1101 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	ZC3H11A	O75152	810 aa	Known RBP eCLIP	3.76	□□□□□ -1.81	4e-18	■■■□□ 15.5
VMP1-216	ENST00000592790	LRRN2	O75325	713 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	GTF2H1	P32780	548 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	VHL	P40337	213 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	GARS	P41250	739 aa	Known RBP	3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	ELF3	P78545	371 aa	Predicted RBP	3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	UAP1	Q16222	522 aa	Predicted RBP	3.76	□□□□□ -1.81
VMP1-216	ENST00000592790		Q4G0T1	1027 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	RNF43	Q68DV7	783 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	MFSD5	Q6N075	450 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	RINT1	Q6NUQ1	792 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	SRRM1	Q8IYB3	904 aa	Known RBP	3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	RCOR2	Q8IZ40	523 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	CATSPER1	Q8NEC5	780 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	PYROXD1	Q8WU10	500 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	CDHR1	Q96JP9	859 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	SERPINI1	Q99574	410 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	TRIM51	Q9BSJ1	452 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	CCDC28B	Q9BUN5	200 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	SAR1A	Q9NR31	198 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	TBC1D22B	Q9NU19	505 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	TMEM260	Q9NX78	707 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	SLC24A2	Q9UI40	661 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	ANAPC7	Q9UJX3	599 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	PPP1R9A	Q9ULJ8	1098 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	TPX2	Q9ULW0	747 aa	Known RBP	3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	GRIN2D	O15399	1336 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	BCL9	O00512	1426 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	RCCD1	A6NED2	376 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	SPECC1L-ADORA2A	F8WAN1	911 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	NVL	O15381	856 aa	Known RBP	3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	SIPA1L3	O60292	1781 aa	Predicted RBP	3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	CAND2	O75155	1236 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	RASSF9	O75901	435 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	RNF8	O76064	485 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	FAM153B	P0C7A2	387 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	PLS3	P13797	630 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	FLT1	P17948	1338 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	TNNI1	P19237	187 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	SLC9A1	P19634	815 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	DRD4	P21917	467 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	SFN	P31947	248 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	MMP13	P45452	471 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	STAT2	P52630	851 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	CYP4A11	Q02928	519 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	ASPH	Q12797	758 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	PLS1	Q14651	629 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	BMT2	Q1RMZ1	405 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	PARP6	Q2NL67	630 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	FAM153C	Q494X1	144 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	USH1G	Q495M9	461 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	WLS	Q5T9L3	541 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	MEX3C	Q5U5Q3	659 aa	Known RBP	3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	IZUMO3	Q5VZ72	239 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	C4orf22	Q6V702	233 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	ZNF571	Q7Z3V5	609 aa	Predicted RBP	3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	RNF168	Q8IYW5	571 aa	Predicted RBP	3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	SAMD3	Q8N6K7	520 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	OR2W6P	Q8NHA6	318 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	UHMK1	Q8TAS1	419 aa	Known RBP	3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	GDAP1	Q8TB36	358 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	SH3TC2	Q8TF17	1288 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	DNAJC9	Q8WXX5	260 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	HES6	Q96HZ4	224 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	RILP	Q96NA2	401 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	CSRNP1	Q96S65	589 aa		3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	EIF2AK1	Q9BQI3	630 aa	Known RBP	3.76	□□□□□ -1.81
VMP1-216	ENST00000592790	REEP2	Q9BRK0	252 aa		3.76	□□□□□ -1.81

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