RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 SMARCE1Q969G3 411 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 CCDC47Q96A33 483 aaKnown RBP5.89□□□□□ -1.47
LIG3-210ENST00000588109 PAGE5Q96GU1 130 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 FAM167AQ96KS9 214 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 ANP32EQ9BTT0 268 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 TRAIPQ9BWF2 469 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.89□□□□□ -1.47
LIG3-210ENST00000588109 RBSNQ9H1K0 784 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 BLZF1Q9H2G9 400 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 ZHX3Q9H4I2 956 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 NRBP2Q9NSY0 501 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 ERAP1Q9NZ08 941 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 TMEM63CQ9P1W3 806 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 ZFATQ9P243 1243 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 WRAP73Q9P2S5 460 aaPredicted RBP5.89□□□□□ -1.47
LIG3-210ENST00000588109 DDX20Q9UHI6 824 aaKnown RBP5.89□□□□□ -1.47
LIG3-210ENST00000588109 SLC6A14Q9UN76 642 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 EMSYQ7Z589 1322 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 SYNRGQ9UMZ2 1314 aa5.89□□□□□ -1.47
LIG3-210ENST00000588109 PCNTO95613 3336 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 IGKV6D-21A0A0A0MT36 114 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 SYCE3A1L190 88 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 TMEM150BA6NC51 233 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 H3BRB1 525 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 GNB5O14775 395 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 ZNF862O60290 1169 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 KPNA6O60684 536 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 TBCAO75347 108 aaKnown RBP5.88□□□□□ -1.47
LIG3-210ENST00000588109 RGS9O75916 674 aaPredicted RBP5.88□□□□□ -1.47
LIG3-210ENST00000588109 LYPLA2O95372 231 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 PGK1P00558 417 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 MYL1P05976 194 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 XRCC6P12956 609 aaKnown RBP eCLIP5.88□□□□□ -1.47
LIG3-210ENST00000588109 IDEP14735 1019 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 GRNP28799 593 aaKnown RBP5.88□□□□□ -1.47
LIG3-210ENST00000588109 SERPINB4P48594 390 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 POLGP54098 1239 aaPredicted RBP5.88□□□□□ -1.47
LIG3-210ENST00000588109 SLC12A3P55017 1021 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 GJA9P57773 515 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 SNRPNP63162 240 aaKnown RBP5.88□□□□□ -1.47
LIG3-210ENST00000588109 ASIC1P78348 528 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 RAD51AP2Q09MP3 1159 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 PNOCQ13519 176 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 CUL4BQ13620 913 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 PLCB4Q15147 1175 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 PKN2Q16513 984 aaKnown RBP5.88□□□□□ -1.47
LIG3-210ENST00000588109 ZSCAN23Q3MJ62 389 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 TMCO4Q5TGY1 634 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 ELMSAN1Q6PJG2 1045 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 SASS6Q6UVJ0 657 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 ANO5Q75V66 913 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 DYMQ7RTS9 669 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 ZNF438Q7Z4V0 828 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 RNF180Q86T96 592 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 SYT2Q8N9I0 419 aaPredicted RBP5.88□□□□□ -1.47
LIG3-210ENST00000588109 PCSK9Q8NBP7 692 aaKnown RBP5.88□□□□□ -1.47
LIG3-210ENST00000588109 ATP8B4Q8TF62 1192 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 LRRC15Q8TF66 581 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 ERCC4Q92889 916 aaPredicted RBP5.88□□□□□ -1.47
LIG3-210ENST00000588109 SPACA7Q96KW9 195 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 CEP170P1Q96L14 293 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 PCYT2Q99447 389 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 SH2D3AQ9BRG2 576 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 C16orf70Q9BSU1 422 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 MTG1Q9BT17 334 aaPredicted RBP5.88□□□□□ -1.47
LIG3-210ENST00000588109 KATNAL1Q9BW62 490 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 TUT1Q9H6E5 874 aaKnown RBP5.88□□□□□ -1.47
LIG3-210ENST00000588109 ANKEF1Q9NU02 776 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 BLOC1S4Q9NUP1 217 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 KBTBD4Q9NVX7 518 aa5.88□□□□□ -1.47
LIG3-210ENST00000588109 DBR1Q9UK59 544 aaKnown RBP5.88□□□□□ -1.47
LIG3-210ENST00000588109 LOXHD1Q8IVV2 1947 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 NPHP3-ACAD11A0A0J9YXS1 232 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 MYADML2A6NDP7 307 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 MYMKA6NI61 221 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 M0R082 166 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 BIN1O00499 593 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 HBP1O60381 514 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 USO1O60763 962 aaKnown RBP5.87□□□□□ -1.47
LIG3-210ENST00000588109 MMP20O60882 483 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 LILRB5O75023 590 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 ADAMTS4O75173 837 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 GHRHP01286 108 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 RPN1P04843 607 aaKnown RBP5.87□□□□□ -1.47
LIG3-210ENST00000588109 HOXD8P13378 290 aaPredicted RBP5.87□□□□□ -1.47
LIG3-210ENST00000588109 CCL5P13501 91 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 CPB1P15086 417 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 NPR3P17342 541 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 CYP11B2P19099 503 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 CASP1P29466 404 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 RARRES1P49788 294 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 NRLP54845 237 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 NPEPPSP55786 919 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 IGBP1P78318 339 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 MLLT1Q03111 559 aaPredicted RBP5.87□□□□□ -1.47
LIG3-210ENST00000588109 EHHADHQ08426 723 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 PPFIA1Q13136 1202 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 KIAA0753Q2KHM9 967 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 ZNF484Q5JVG2 852 aa5.87□□□□□ -1.47
LIG3-210ENST00000588109 FAM102BQ5T8I3 360 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms